PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G184500.3.p
Common NameGLYMA_18G184500, LOC100780060
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 564aa    MW: 63094.1 Da    PI: 6.7584
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G184500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772.1e-2418118198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+kvlt sd++++g +++ +k+a+e+     ++k++ +++l+ +d++g +W++k+i+r++++r++lt+GW++Fv +++L +gD++vF   
  Glyma.18G184500.3.p  18 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSKSTPTQELVAKDLQGYEWRFKHIFRGQPRRHLLTTGWSNFVTSKRLVAGDTFVFL-- 105
                          99****************************9555555679************************************************.. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          + +++el+v+v+r
  Glyma.18G184500.3.p 106 RGNNGELRVGVRR 118
                          3489999****98 PP
2Auxin_resp912e-30144225183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha++t++ F v+Y+Pra  s+F+v+v+k+++a+++k+ vGmRfk +fe+++s+e  +r+sGt+vgv+d++p +W nS+WrsLk
  Glyma.18G184500.3.p 144 ASHAVATQTLFVVYYKPRA--SQFIVSVNKYLEAINQKCNVGMRFKTRFEGDESPEnyKRFSGTIVGVEDISP-HWVNSNWRSLK 225
                          789***************8..9********************************9844578**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-389147IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-3811133IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-2016118No hitNo description
PfamPF023623.6E-2218118IPR003340B3 DNA binding domain
PROSITE profilePS5086312.37918120IPR003340B3 DNA binding domain
SMARTSM010191.9E-2218120IPR003340B3 DNA binding domain
PfamPF065076.7E-29144225IPR010525Auxin response factor
PfamPF023097.8E-12415540IPR033389AUX/IAA domain
PROSITE profilePS5174525.028453534IPR000270PB1 domain
SuperFamilySSF542774.71E-13456529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MSPDPCPAEL PSPRVHSFCK VLTASDTSTH GGFSVLRKHA TECLPALDMS KSTPTQELVA  60
KDLQGYEWRF KHIFRGQPRR HLLTTGWSNF VTSKRLVAGD TFVFLRGNNG ELRVGVRRIA  120
PVQSSMPSSV ISSQSMHLGV LATASHAVAT QTLFVVYYKP RASQFIVSVN KYLEAINQKC  180
NVGMRFKTRF EGDESPENYK RFSGTIVGVE DISPHWVNSN WRSLKVQWDE PASFPRPDRV  240
LPWEIEPILA SVPTTSSQTA AIKNKRPRQA SELADLGDTP LAFPTFWDAG LTQSDMAKLS  300
VMAEIKRSDS SSHMWHHNSK SSNNGISMNQ TEASWLSSPS QLYHDTTDDS KSISAWPISK  360
PHSERLNNDH FLDQVDKEIN KVEAATSYRL FGIDLIDHAR NNSLSAENAS GITSECKIDV  420
NHVSDISKAS KEWNQEQLQL SPKETQSKQV CSRSCTKVQM QGVAVGRAVD LTTLDGYDQL  480
VDELEKMFDI KGQLQLRNKW EIVFTDDEGD MMLVGDDPWL EFCKMVRRIF IYSSQDVHKL  540
SSGSKLPISS MEEIVTSLDT TET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1152248108355Auxin response factor 1
4ldw_A1e-1152248108355Auxin response factor 1
4ldw_B1e-1152248108355Auxin response factor 1
4ldx_A1e-1152248108355Auxin response factor 1
4ldx_B1e-1152248108355Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.349070.0leaf| meristem| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G184500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-142AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602602.10.0auxin response factor 9 isoform X2
RefseqXP_028214239.10.0auxin response factor 9-like isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0R0FA600.0A0A0R0FA60_SOYBN; Auxin response factor
TrEMBLA0A445FUL90.0A0A445FUL9_GLYSO; Auxin response factor
STRINGGLYMA18G40180.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9