PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G201800.1.p

Common Name

GLYMA_18G201800, LOC100527384

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 238aa MW: 26807.6 Da PI: 10.0348

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G201800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.2	2.2e-29	14	71	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktile...lmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rFveav++LGG+e+AtPk il+ +m+v L ++hvkSHLQkYR+ Glyma.18G201800.1.p 14 KERLRWTQELHDRFVEAVNRLGGPERATPKGILKemkAMGVSELNIYHVKSHLQKYRI 71 68****************************7511167788999**********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.897	11	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-27	12	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-15	13	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-22	14	72	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-8	16	70	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-12	103	142	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MGSKQRLRGS ATAKERLRWT QELHDRFVEA VNRLGGPERA TPKGILKEMK AMGVSELNIY 60 HVKSHLQKYR ISKLIPESPT RGKLEKRSMS DILPNFSSIT ALQLKEVLQM QTGMQNRLRD 120 KTEVQRSLKL KIEAQGKYFE RIGQSNHSKT IIGKACKPFA STIASLPSLF EESESLKTQP 180 EEEHQSAKKQ KISGEGVFPT SFDHESSTPP ECYNETWDFS WSQLAAACQS PLVPSFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	13	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	13	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-21	14	73	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	14	73	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	14	73	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	14	73	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	13	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	13	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	13	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	13	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	13	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	13	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G201800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092223	0.0	BT092223.1 Soybean clone JCVI-FLGm-10K14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006601779.1	1e-176	MYB-CC domain-containing transcription factor PHR29 isoform X1
Swissprot	Q9SJW0	2e-43	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	K7MTI9	1e-175	K7MTI9_SOYBN; Uncharacterized protein
STRING	GLYMA18G43130.2	1e-176	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-45	G2-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.18G201800.1.p
Entrez Gene	100527384