PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G201800.3.p
Common NameGLYMA_18G201800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 236aa    MW: 26580.4 Da    PI: 10.0348
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G201800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.22.1e-291471155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktile...lmkvkgLtlehvkSHLQkYRl 55
                         k+rlrWt+eLH+rFveav++LGG+e+AtPk il+   +m+v  L ++hvkSHLQkYR+
  Glyma.18G201800.3.p 14 KERLRWTQELHDRFVEAVNRLGGPERATPKGILKemkAMGVSELNIYHVKSHLQKYRI 71
                         68******************************7511167788999************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.8971174IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-271272IPR009057Homeodomain-like
SuperFamilySSF466893.4E-151371IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-221472IPR006447Myb domain, plants
PfamPF002494.5E-81670IPR001005SANT/Myb domain
PfamPF143796.7E-8103140IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGSKQRLRGS ATAKERLRWT QELHDRFVEA VNRLGGPERA TPKGILKEMK AMGVSELNIY  60
HVKSHLQKYR ISKLIPESPT RGKLEKRSMS DILPNFSSIT ALQLKEVLQM QTGMQNRLRD  120
KTERSLKLKI EAQGKYFERI GQSNHSKTII GKACKPFAST IASLPSLFEE SESLKTQPEE  180
EHQSAKKQKI SGEGVFPTSF DHESSTPPEC YNETWDFSWS QLAAACQSPL VPSFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-211473157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-211473157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-211473157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-211473157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G201800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0922230.0BT092223.1 Soybean clone JCVI-FLGm-10K14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601779.11e-173MYB-CC domain-containing transcription factor PHR29 isoform X1
SwissprotQ9SJW05e-40PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLI1N2Y11e-173I1N2Y1_SOYBN; Uncharacterized protein
STRINGGLYMA18G43130.21e-172(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-42G2-like family protein