PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G210700.1.p
Common NameGLYMA_18G210700, LOC100782382
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 153aa    MW: 16765.1 Da    PI: 4.6288
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G210700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH110.00077745954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         E++ R+ + + +++Lr++  ++       l+Ka+i   A +YI +L
  Glyma.18G210700.1.p  7 EKK-RESLEDTLQQLRDVTNSS------ALNKASIIVDASKYIEKL 45
                         555.477888888888887663......5**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.71E-6658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-6756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.71983152IPR002912ACT domain
CDDcd048732.16E-492148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MASTSREKKR ESLEDTLQQL RDVTNSSALN KASIIVDASK YIEKLKQKVE GLNSELGIAD  60
SSTSQIDELP MVVVKTLKKG FLINVLLEKN FPGMLVSILE TFEELGLDVL DARVSCEDSF  120
QLEAVGRESH KNDSVDAQVV KQAVLQAIKN VD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.386670.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G210700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0923090.0BT092309.1 Soybean clone JCVI-FLGm-10J13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551597.11e-105transcription factor SCREAM2
TrEMBLK7MTR41e-103K7MTR4_SOYBN; Uncharacterized protein
STRINGGLYMA18G44280.21e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF7241015
Representative plantOGRP190735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.13e-11bHLH family protein