PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G220100.1.p
Common NameGLYMA_18G220100, LOC100806779
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 843aa    MW: 91543.9 Da    PI: 6.6756
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G220100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.71.4e-1254768312374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lLl+cAeavss++le a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp +++s     ++++a+++f+ +sP++
  Glyma.18G220100.1.p 476 LTLLLQCAEAVSSENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQS----HKVASAFQVFNGISPFV 561
                          579*********************************************************999988885....89999************ PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+g+p +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + 
  Glyma.18G220100.1.p 562 KFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGT----SMEALEATGKRLSDFANKLGLPFEFFP- 646
                          **********************************************************....***************************. PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          va+++ +l++e+L+v + Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++ n++sFl rf+ea++yysalfdsl
  Glyma.18G220100.1.p 647 VAEKVGNLDPERLNVCKTEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS-NTGSFLGRFVEAIHYYSALFDSL 729
                          7*************************9..999999999999....*******************97.699******************** PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                           +++++eseer++vE++ll+rei+nv+a  g +r+ + + +++Wre+l+++GF+ ++l  +aa+qa+lll +++s+gy++ e++g l lg
  Glyma.18G220100.1.p 730 GSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPK-FHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLG 818
                          *********************************998887.************************************************** PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          Wkd  L+++SaWr
  Glyma.18G220100.1.p 819 WKDLCLLTASAWR 831
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.074449811IPR005202Transcription factor GRAS
PfamPF035144.8E-123476831IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MAACALFSAG GNITEDGNVN GSGSASSTPL TSASNSSSMS NEEKKHNLHG GGIMPQPHCE  60
RKMVRKRMAS EMEVNVHATP PHNSSSTTSD YPRFPRRSST NMNMLEKGST STTTATTTTL  120
AEGTCNNNNN NNNNNNNSNC SSYHYNNSNN SNSGNISSRD NVAIPNYPTV TVTTNYSTML  180
LPSSTTTTIN SSGVAPNYIT HHQHHHFQGL VESQDHQQNP VPAVCGFSGL PLFPSQSQRN  240
RDSNNTPTTN NIRNSGGNIV DVVASSSSSS SMDDTSAAAA TSGWIDGILK DLIHSSNSVS  300
IPQLISNVRE IIYPCNPNLA MVLEYRLRLL LTESTTQNKR GTEGVPLPPS VSSVKLTSNR  360
VVDGIVPNLH FTDASGGAVV VNQHMLSNWG VPQITHHHDN NTNTNTNNSN NPSVSLVTLP  420
SPTPPLPPPH YSPPQEKHPQ EEDLAATSTA EVALSRKKKE ELREQKKKDE EGLHLLTLLL  480
QCAEAVSSEN LEDANKMLLE ISQLSTPFGT SAQRVAAYFS EAISARLVSS CLGIYATLPH  540
THQSHKVASA FQVFNGISPF VKFSHFTANQ AIQEAFEREE RVHIIDLDIM QGLQWPGLFH  600
ILASRPGGAP YVRLTGLGTS MEALEATGKR LSDFANKLGL PFEFFPVAEK VGNLDPERLN  660
VCKTEAVAVH WLQHSLYDVT GSDTNTLWLL QRLAPKVVTV VEQDLSNTGS FLGRFVEAIH  720
YYSALFDSLG SSYGEESEER HVVEQQLLSR EIRNVLAVGG PSRTGEPKFH NWREKLQQCG  780
FRGISLAGNA ATQASLLLGM FPSEGYTLVE DNGILKLGWK DLCLLTASAW RPPFHSAITH  840
HN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04588323380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.194900.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem, leaf primordia, between the cortex and the differentiating vessels in lower shoots and in root endodermis. {ECO:0000269|PubMed:11333309}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G220100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551631.10.0protein SCARECROW
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLK7MTY70.0K7MTY7_SOYBN; Uncharacterized protein
STRINGGLYMA18G45220.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein