PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G224300.1.p
Common NameGLYMA_18G224300, LOC100813753
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27753.8 Da    PI: 8.9566
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G224300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.3e-28958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krienk+nrqvtfskRrng+ KKA+ELSvLCdaeva++ifs +gk ++++
  Glyma.18G224300.1.p  9 KRIENKINRQVTFSKRRNGLVKKAKELSVLCDAEVALVIFSARGKPFTFP 58
                         79*********************************************998 PP
2K-box85.98e-29821691097
                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           e +++ ++qe+ kL+++ e+Lqr+qR l GedL++Ls+keL  Le+qLek+l++ R++K++l+++q+eel++ke+ l++ nk+Lr k
  Glyma.18G224300.1.p  82 IELENQDWYQEMLKLNEKCESLQRTQRLLHGEDLGPLSIKELLILEEQLEKALSQARQRKTQLMIKQMEELRQKERHLEDLNKELRLK 169
                          466789*******************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.6161IPR002100Transcription factor, MADS-box
CDDcd002653.63E-38274No hitNo description
SuperFamilySSF554551.07E-31292IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-28323IPR002100Transcription factor, MADS-box
PfamPF003194.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014865.0E-2585169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.70686180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FSKRRNGLVK KAKELSVLCD AEVALVIFSA RGKPFTFPDD  60
AESIMKTYDR YRKYYSHQHG NIELENQDWY QEMLKLNEKC ESLQRTQRLL HGEDLGPLSI  120
KELLILEEQL EKALSQARQR KTQLMIKQME ELRQKERHLE DLNKELRLKP PFQLEPYGFN  180
LKASLWGSTS SADGDGSFPL QPSLTYPEPF LQIGYSVQGE PSIVPKSMAS ETNFQGWFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-188216916100Developmental protein SEPALLATA 3
4ox0_B1e-188216916100Developmental protein SEPALLATA 3
4ox0_C1e-188216916100Developmental protein SEPALLATA 3
4ox0_D1e-188216916100Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G224300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551643.11e-177agamous-like MADS-box protein AGL6 isoform X1
RefseqXP_028212482.11e-177agamous-like MADS-box protein AGL6
SwissprotQ8LLR18e-91MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A445FXR01e-176A0A445FXR0_GLYSO; Agamous-like MADS-box protein AGL6
TrEMBLK7MU291e-176K7MU29_SOYBN; Uncharacterized protein
STRINGGLYMA18G45761.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.15e-71AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]