PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G246100.1.p
Common NameGLYMA_18G246100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 204aa    MW: 22901.1 Da    PI: 6.6731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G246100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12101147455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR+++  ++  L   +P +     kK +K+++L++Av+Y+k+Lq
  Glyma.18G246100.1.p 101 VHILAERKRREELTRCIIALSATIPGL-----KKTDKVSVLREAVNYVKQLQ 147
                          5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.81197146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16100158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10100147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-15101158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-11102151No hitNo description
SMARTSM003532.4E-13103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGGDDFFNIQ SHGHMSPFNE EEYSSGERDM IVQQQVFSPN LSSSSLQSNL ELPYSSSPTG  60
NVLSFDNPLV GSLHPQNDSA KSMEQSHCVE PKAYPRTNAQ VHILAERKRR EELTRCIIAL  120
SATIPGLKKT DKVSVLREAV NYVKQLQERV KELENQMRKE CVNSIILTKK ALICKNDRVE  180
ELLEVKVTVL DKEKIFAQNI VLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G246100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028213432.11e-141transcription factor bHLH25-like
TrEMBLA0A0R0FFQ51e-148A0A0R0FFQ5_SOYBN; Uncharacterized protein
STRINGGLYMA09G38241.12e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3662722
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-23bHLH family protein