PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G259100.2.p
Common NameGLYMA_18G259100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 259aa    MW: 28187.3 Da    PI: 5.1599
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G259100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69.2e-113361348
                         HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +++  +lG++ W++Ia++++  Rt++++k++w+++l
  Glyma.18G259100.2.p  3 IHLQDLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 36
                         667789****.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.824140IPR017930Myb domain
CDDcd001672.04E-7136No hitNo description
Gene3DG3DSA:1.10.10.601.8E-15137IPR009057Homeodomain-like
SuperFamilySSF466897.18E-10244IPR009057Homeodomain-like
PfamPF002492.2E-9236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MIIHLQDLLG NRWAAIASYL PQRTDNDIKN YWNTHLRKKL KKMQVGCEGG SFGEGFSASR  60
QIPRGQWERR LQTDIQMAKR ALSEALSPEK PSCNLSASNS NPSDSSSSFS STKPTTTQTV  120
CYASSADNIA RMLKGWMKNP PKSSRTNSSS VTQNSFNNFA AAGADTASSI GAKGPPSSAE  180
LSENNFESLF DFDQSLESSN SDEFSRSLSP EATVLQDESK PDVIGAEIMP FSLLEKWLLD  240
EAGCQEKLVG CGDDAKFF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.204270.0leaf| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G259100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937840.0BT093784.1 Soybean clone JCVI-FLGm-24M4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240154.10.0MYB transcription factor MYB60
TrEMBLA0A0R0F4C80.0A0A0R0F4C8_SOYBN; Uncharacterized protein
STRINGGLYMA18G49360.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-47myb domain protein 30