PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G259200.1.p
Common NameGLYMA_18G259200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 89aa    MW: 10069.5 Da    PI: 10.1948
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G259200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer50.83.8e-1631702060
          ZF-HD_dimer 20 havDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                           vDG +Ef++s g+egt  a++Ca C+CHRnFHR+e++++
  Glyma.18G259200.1.p 31 RIVDGYREFVAS-GAEGTGGAMTCATCDCHRNFHRKEEQTQ 70
                         579********9.999********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152310.1621866IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.5E-163167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-113380IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MKRVILRRDG RTRYSNNSLV TIVRHVRYIA RIVDGYREFV ASGAEGTGGA MTCATCDCHR  60
NFHRKEEQTQ MVCACSSHPT TQIRRHSN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, flowers and siliques, and, to a lower extent, in inflorescence. {ECO:0000269|PubMed:16412086}.
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G259200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022751923.14e-21mini zinc finger protein 2-like
RefseqXP_022751924.14e-21mini zinc finger protein 2-like
SwissprotQ9LJW52e-14MIF2_ARATH; Mini zinc finger protein 2
TrEMBLA0A0R0FD962e-58A0A0R0FD96_SOYBN; Uncharacterized protein
STRINGGLYMA09G37320.21e-31(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3663322
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.16e-17mini zinc finger 2
Publications ? help Back to Top
  1. Bollier N, et al.
    At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato.
    Plant Cell, 2018. 30(1): p. 83-100
    [PMID:29298836]