PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G262000.1.p
Common NameGLYMA_18G262000, LOC100792465
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 232aa    MW: 26672.2 Da    PI: 9.7073
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G262000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-17956148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++ Ed+ll d+v+++G g W++++++ g++R++k+c++rw++yl
  Glyma.18G262000.1.p  9 KGAWSQFEDDLLRDCVNLHGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 56
                         79********************************************97 PP
2Myb_DNA-binding44.34e-1462107148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg + ++E +l ++++k+lG++ W++Ia +++ gRt +++k++w+ y+
  Glyma.18G262000.1.p  62 RGDFNEDEVDLMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNAYM 107
                          7899******************.*********.************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.926456IPR017930Myb domain
SuperFamilySSF466897.99E-276103IPR009057Homeodomain-like
SMARTSM007176.0E-13858IPR001005SANT/Myb domain
PfamPF002491.1E-15956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-201063IPR009057Homeodomain-like
CDDcd001671.50E-81156No hitNo description
PROSITE profilePS5129423.96357111IPR017930Myb domain
SMARTSM007172.5E-1361109IPR001005SANT/Myb domain
PfamPF002492.1E-1262106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2264111IPR009057Homeodomain-like
CDDcd001671.54E-865107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEGSSGVRKG AWSQFEDDLL RDCVNLHGEG KWHLVPQRAG LNRCRKSCRL RWLNYLKPNI  60
KRGDFNEDEV DLMIRLHKLL GNRWSLIAGR LPGRTSNDVK NYWNAYMRRK VHSHNKDNKI  120
KKQETKSTVK PHEVIKPIPR VLTKTSPWLQ RKFINSPKVG VSEEGATSSE NWWETLLADK  180
EDNAVFNNNN NTCFFGGVHG ELNLWNEELT SIDFDFVTQG ELGGIVNFQN P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2231131110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G262000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9342801e-47AB934280.1 Glycine max gene for MYB transcription factor, complete cds, allele: R, cultivar: Clark.
GenBankAB9342811e-47AB934281.1 Glycine max gene for MYB transcription factor, complete cds, allele: r-m.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602928.11e-172transcription factor MYB114
SwissprotQ9FNV92e-54MY113_ARATH; Transcription factor MYB113
TrEMBLI1N4F91e-170I1N4F9_SOYBN; Uncharacterized protein
STRINGGLYMA18G49690.11e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-56myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]