PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G263400.1.p
Common NameGLYMA_18G263400, LOC100796679
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 521aa    MW: 56559.8 Da    PI: 7.9364
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G263400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.7e-33227284260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgse+prsYY+Ct+ +C vkkkver+  d++++ei+Y+g+Hnhek
  Glyma.18G263400.1.p 227 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCVVKKKVERAP-DGHITEIIYKGQHNHEK 284
                          8****************************************.***************85 PP
2WRKY107.28e-34406464159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.18G263400.1.p 406 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 464
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28218286IPR003657WRKY domain
PROSITE profilePS5081123.606221285IPR003657WRKY domain
SuperFamilySSF1182901.23E-25225285IPR003657WRKY domain
SMARTSM007749.7E-36226284IPR003657WRKY domain
PfamPF031061.3E-24227283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-37391466IPR003657WRKY domain
SuperFamilySSF1182901.29E-29398466IPR003657WRKY domain
PROSITE profilePS5081139.192401466IPR003657WRKY domain
SMARTSM007749.6E-40406465IPR003657WRKY domain
PfamPF031061.8E-26407464IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MYTPNADSGT APHPRPTITL PPRPSAEAFF SAAGGASPGP MTLVSSFFGS DAAADCRSFS  60
QLLAGAMASP MAFSAAAASA ADNSGKDDDG PHKGFKQSRP MNLVIARSPV FTVPPGLSPS  120
GFLNSPGFFS PQSPFGMSHQ QALAQVTAQA VLAQSHMHMQ ADYQMPSVTA PTEPPVQQLS  180
FALNEASEQQ VVSCVSEPRN AQLEAPELSQ ADKKYQPSSQ AIDKPADDGY NWRKYGQKQV  240
KGSEYPRSYY KCTHLNCVVK KKVERAPDGH ITEIIYKGQH NHEKPQANRR AKDNSDSNGN  300
VTVQPKSESN SQGWVGQLNK LSENIPNSSV PESDQTSNQG APRQLLPGSN ESEEVGIVDN  360
REEADDGEPN PKRRNTDVGV SEVPLSQKTV TEPKIIVQTR SEVDLLDDGY RWRKYGQKVV  420
KGNPHPRSYY KCTSAGCNVR KHVERASTDP KAVITTYEGK HNHDVPAARN SSHNTASSNS  480
MPLKPHNVVP EKHPLLKDKD FGGNDQRPVH LRLKEEQIIV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40227467878Probable WRKY transcription factor 4
2lex_A2e-40227467878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.509430.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G263400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753550.0EU375355.1 Glycine max transcription factor (WRKY4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602933.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-147WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLI1N4H10.0I1N4H1_SOYBN; Uncharacterized protein
STRINGGLYMA18G49830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-126WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]