PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G273400.1.p
Common NameGLYMA_18G273400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 259aa    MW: 29973.7 Da    PI: 6.4043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G273400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd+ll ++v   G g+W+++a++ g++R +k+c++rw +yl
  Glyma.18G273400.1.p 16 KGPWTGEEDKLLSEYVCFNGEGRWSSVAQCTGLKRNGKSCRLRWVNYL 63
                         79******************************9*************97 PP
2Myb_DNA-binding43.85.9e-1473113547
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          T+ E  +++++++ +G++ W+tIa++++ gRt++++k++w+++
  Glyma.18G273400.1.p  73 TPIEVGIIIELHAIFGNK-WSTIAKYLP-GRTDNDIKNYWRTH 113
                          66666789**********.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-191166IPR009057Homeodomain-like
PROSITE profilePS5129413.0551163IPR017930Myb domain
SuperFamilySSF466893.74E-2814110IPR009057Homeodomain-like
SMARTSM007171.5E-111565IPR001005SANT/Myb domain
PfamPF002494.3E-131663IPR001005SANT/Myb domain
CDDcd001674.51E-81863No hitNo description
PROSITE profilePS5129421.13864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-2267116IPR009057Homeodomain-like
SMARTSM007176.6E-1268116IPR001005SANT/Myb domain
PfamPF002495.0E-1270113IPR001005SANT/Myb domain
CDDcd001675.26E-973114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEAMMGSLAT EKEWRKGPWT GEEDKLLSEY VCFNGEGRWS SVAQCTGLKR NGKSCRLRWV  60
NYLRPGLKRG QLTPIEVGII IELHAIFGNK WSTIAKYLPG RTDNDIKNYW RTHFEKSGKS  120
KHKKLEMQKA KVLKQLKQKQ QPQEYDVKSI KSHEETKNET KSYETENNKQ KEVDFMCPTM  180
EHQYIVPSMH EGFSSTWPDT VLGDDGSWFS LWDFDDEPQC SADYVNQFSE SVVPNQATFG  240
VGEDSMQNHD KIFYFDDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-221611627126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G273400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028212324.10.0transcription factor WER-like
SwissprotQ9C9G71e-47MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0R0FDV00.0A0A0R0FDV0_SOYBN; Uncharacterized protein
STRINGGLYMA18G50891.11e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.17e-63myb domain protein 121
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]