PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G273600.1.p
Common NameDt2, GLYMA_18G273600, LOC100788956
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 28452.6 Da    PI: 9.7732
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G273600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.8e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+ +qvtf kRr g+lKKA+E+SvLCda+va+iifs++gkl+eyss
  Glyma.18G273600.1.p  9 KRIENKTSQQVTFFKRRSGLLKKASEISVLCDAQVALIIFSTKGKLFEYSS 59
                         79***********************************************96 PP
2K-box77.92.5e-26871691496
                K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                             ++ e+ kL +++e L+r++ ++ G+dL++LslkeL++Leqq+e+slk+iR++Kn+++ +++++l kk + lq +n+ L k
  Glyma.18G273600.1.p  87 PGFWSFEHIKLTAKVEVLERNIMNFFGNDLDPLSLKELHSLEQQIETSLKRIRTRKNQVMNQSVSDLHKKARTLQVQNRWLGK 169
                          467999************************************************************************98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.333161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-30278IPR002100Transcription factor, MADS-box
CDDcd002657.92E-39275No hitNo description
PRINTSPR004041.3E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.44587177IPR002487Transcription factor, K-box
PfamPF014861.8E-2389169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGRVQLKR IENKTSQQVT FFKRRSGLLK KASEISVLCD AQVALIIFST KGKLFEYSSE  60
RSMEDLLERY ERCSHTALAG ANNVESPGFW SFEHIKLTAK VEVLERNIMN FFGNDLDPLS  120
LKELHSLEQQ IETSLKRIRT RKNQVMNQSV SDLHKKARTL QVQNRWLGKM KEKAKTVTEG  180
PHNGPETLGF DSSTLNLSSP QLPPPPSPQR LVPSLTLSET MQGGTPVEET GEAQTVPSGN  240
SLIPPWMLRC MSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-18170169MEF2C
5f28_B5e-18170169MEF2C
5f28_C5e-18170169MEF2C
5f28_D5e-18170169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Function -- GeneRIF ? help Back to Top
  1. A second soybean gene (Dt2) regulating stem growth was identified, which, in the presence of Dt1, produces semideterminate plants with terminal racemes similar to those observed in determinate plants. [Dt2]
    [PMID: 25005919]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G273600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985710.0BT098571.1 Soybean clone JCVI-FLGm-16N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340272.10.0MADS-box protein Dt2
RefseqXP_006602963.10.0MADS-box protein Dt2 isoform X1
RefseqXP_006602964.10.0MADS-box protein Dt2 isoform X2
RefseqXP_028213063.10.0truncated transcription factor CAULIFLOWER A-like isoform X1
RefseqXP_028213064.10.0truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotD7SMN61e-75FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A445FYC00.0A0A445FYC0_GLYSO; Agamous-like MADS-box protein AGL8-like isoform B
TrEMBLA0A445FYE20.0A0A445FYE2_GLYSO; Agamous-like MADS-box protein AGL8-like isoform A
TrEMBLI1N4Q70.0I1N4Q7_SOYBN; MADS-box protein
STRINGGLYMA18G50910.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-68AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Ping J, et al.
    Dt2 is a gain-of-function MADS-domain factor gene that specifies semideterminacy in soybean.
    Plant Cell, 2014. 26(7): p. 2831-42
    [PMID:25005919]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]