PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G281800.1.p

Common Name

GLYMA_18G281800, LOC100788594

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 330aa MW: 35951.8 Da PI: 5.195

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G281800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.4	3.3e-27	39	131	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rWt+qe+l+Li+++++ e+r+r g+ + +p+W+ vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s + + + Glyma.18G281800.1.p 39 RWTRQEILVLIQGKSDAESRFRPGRgsgsafgSGEPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDEAESFWLMRN 128 8*******************87556777779*******************************************999999999888 PP trihelix 84 qle 86 +l+ Glyma.18G281800.1.p 129 DLR 131 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.829	32	103	IPR017877	Myb-like domain
CDD	cd12203	5.78E-15	38	110	No hit	No description
Pfam	PF13837	4.8E-13	39	126	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-6	39	102	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MALDQPSNPN AVDGAGNGAT PCSAADGGDD GRPAARLPRW TRQEILVLIQ GKSDAESRFR 60 PGRGSGSAFG SGEPKWALVS SYCKKHGVNR EPVQCRKRWS NLAGDYKKIK EWESQVRDEA 120 ESFWLMRNDL RRERKLPGYF DREVYNILDS PSSTAAAAAA ETPVAVAEAA SAGDEEVHLY 180 DSNRRVGSED GLFSDSEKDE VLLLAAAKDV PAPVPLSEKQ YQPHLHGCEG EGNPQGTTNG 240 KRATPNPEMG STSQGERKRK RLATDGEEET LQSQLIDVLE KNGKMLHDQL EAQNLNFQLD 300 RQQQKDTASN IVAVLDKLAD ALGRIADKL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.44620	0.0	cotyledon\| somatic embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G281800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-164	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003551802.1	0.0	trihelix transcription factor ASR3
Swissprot	Q8VZ20	2e-98	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	I1N4Y2	0.0	I1N4Y2_SOYBN; Uncharacterized protein
STRING	GLYMA18G51790.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75
Representative plant	OGRP1747	13	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-90	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.18G281800.1.p
Entrez Gene	100788594

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]