PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G002900.1.p
Common NameGLYMA_19G002900, LOC100782779
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 390aa    MW: 43677.7 Da    PI: 6.099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G002900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM996.6e-31561972128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                          p+G++F+P+d el+ e+L++k+   +      +  +++i++++    i++++P++Lp  +k++ ++++fF+k++++yatg+rk+r+    
  Glyma.19G002900.1.p  56 PVGVKFDPSDVELL-EHLAAKCCIGNrephmfI--HQFIPTLEgeqgICYTHPQNLP-GAKTDGSSVHFFHKTANAYATGRRKRRKihhq 141
                          89************.888888665554666431..333444322334**********.55678899*******************86777 PP

                  NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               ++ +W++tg++k+v++ +g ++g kk++v+y  +++  k+ kt+Wvmh+y+l
  Glyma.19G002900.1.p 142 dgltEEHVRWHKTGRTKAVTE-DGVHKGFKKIMVLYirSKKGTKPYKTNWVMHQYHL 197
                          777444889***********9.999***********7645666777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-3739215IPR003441NAC domain
PROSITE profilePS5100529.13955215IPR003441NAC domain
PfamPF023654.6E-1356197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MARSWLIDIR GFAKKVKDTT LSTDDQMKDC GTYSECPKCH YHIDNSNVSH EWPGFPVGVK  60
FDPSDVELLE HLAAKCCIGN REPHMFIHQF IPTLEGEQGI CYTHPQNLPG AKTDGSSVHF  120
FHKTANAYAT GRRKRRKIHH QDGLTEEHVR WHKTGRTKAV TEDGVHKGFK KIMVLYIRSK  180
KGTKPYKTNW VMHQYHLGSE VEKDGEYVVS KIFYQQHKQN EKNEENTMVE DSNVAAQAGP  240
RTPKPNPPTR PCTAKCDDNF DENELLPFIQ DARPIPGESH APPSNVQDED PAWLAGESQA  300
DCDFDGLEDI LLCKEILQSS ALLNHSGLTS TFNGDAKANK LVAPGNNNDY GSYGVSVLDT  360
LELDTPPDFD LSNLQFGSQD STLQWIDTP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.391080.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G002900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0156431e-168AP015643.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0599, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006603789.10.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLA0A0R0ESN70.0A0A0R0ESN7_SOYBN; Uncharacterized protein
STRINGGLYMA19G00640.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.12e-97NAC domain containing protein 44