PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G022200.1.p
Common NameGLYMA_19G022200, LOC100799188
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 98aa    MW: 10065.1 Da    PI: 8.6218
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G022200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.53.1e-282083358
          ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegt........aaalkCaACgCHRnFHRreve 58
                         +v+Y eC+kNhAa++Gg+avDGC+Efm+s + +g         +aal+CaACgCHRnFH+r+++
  Glyma.19G022200.1.p 20 AVKYGECQKNHAANVGGYAVDGCREFMASGSGSGGgsgggegtSAALTCAACGCHRNFHKRQEA 83
                         699*************************954443346777777*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-201894IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.7E-262182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-212281IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.0952381IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MRKRQVVVRR EEPQRSGVRA VKYGECQKNH AANVGGYAVD GCREFMASGS GSGGGSGGGE  60
GTSAALTCAA CGCHRNFHKR QEAEVVSECS SPTSNGT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.559821e-166flower| hypocotyl| pod| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, flowers and siliques, and, to a lower extent, in inflorescence. {ECO:0000269|PubMed:16412086}.
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G022200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0894611e-55BT089461.1 Soybean clone JCVI-FLGm-2C17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554445.14e-64mini zinc finger protein 2
RefseqXP_028216364.14e-64mini zinc finger protein 2-like
SwissprotQ9LJW51e-33MIF2_ARATH; Mini zinc finger protein 2
TrEMBLA0A445FB879e-63A0A445FB87_GLYSO; Mini zinc finger protein 2
TrEMBLI1N6489e-63I1N648_SOYBN; Uncharacterized protein
STRINGGLYMA19G02610.21e-63(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF155034100
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.11e-29mini zinc finger 2
Publications ? help Back to Top
  1. Bollier N, et al.
    At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato.
    Plant Cell, 2018. 30(1): p. 83-100
    [PMID:29298836]