PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G040300.1.p
Common NameGLYMA_19G040300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 93aa    MW: 10318.2 Da    PI: 10.2793
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G040300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38.1e-293484151
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                         kprl+Wtp+LHerF+eav++LGG +kAtPk +l+lm+++ Ltl+h+kSHLQ
  Glyma.19G040300.1.p 34 KPRLKWTPDLHERFIEAVNELGGVDKATPKIVLKLMGIPRLTLYHLKSHLQ 84
                         79************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.2423191IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-263284IPR009057Homeodomain-like
SuperFamilySSF466892.33E-133386IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-213486IPR006447Myb domain, plants
PfamPF002491.8E-83685IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MHALRMHSPT ERHMMMHGGN GSGDSGLVLS TDAKPRLKWT PDLHERFIEA VNELGGVDKA  60
TPKIVLKLMG IPRLTLYHLK SHLQVTLFQL PI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-193484151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-193484151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-193484151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-193484151Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.237821e-124leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G040300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-63AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574747.11e-50myb-related protein 2 isoform X1
RefseqXP_006574748.11e-50myb-related protein 2 isoform X2
RefseqXP_020205825.15e-53myb-related protein 2
RefseqXP_028198916.11e-50myb-related protein 2-like isoform X1
RefseqXP_028198923.11e-50myb-related protein 2-like isoform X2
RefseqXP_028198930.11e-50myb-related protein 2-like isoform X3
RefseqXP_028198937.11e-50myb-related protein 2-like isoform X4
SwissprotQ9SQQ91e-37PHL9_ARATH; Myb-related protein 2
TrEMBLA0A445FC131e-60A0A445FC13_GLYSO; Myb-related protein 2
TrEMBLK7MWF61e-60K7MWF6_SOYBN; Uncharacterized protein
STRINGGLYMA19G05385.12e-61(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15413911
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.15e-40G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]