PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G056400.1.p
Common NameGLYMA_19G056400, LOC100780442
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 399aa    MW: 44397.2 Da    PI: 4.8203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G056400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.15.3e-30561982128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                          p G++F+P+d el+ e+L++k+   +    + ++e+i++++    i++++P++Lp  +k++ + ++fF+++ ++yatg+rk+r+      
  Glyma.19G056400.1.p  56 PLGVKFDPSDVELL-EHLAAKCGIGNtqqhMFINEFIPTLEgdqgICYTHPENLP-GAKKDGSYVHFFHRTTNAYATGQRKRRKihhqqg 143
                          89************.999999877663444223334554423445**********.556778899******************8677777 PP

                  NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                             ++ +W++tgk+k++++ +g+++g kk++v+y  ++++g+   k++Wvmh+y+l
  Glyma.19G056400.1.p 144 ltEEHVRWHKTGKTKAIIE-DGAHKGFKKIMVLYVRSSENGSrsyKSNWVMHQYHL 198
                          7444788************.999***********655555544449********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-3539217IPR003441NAC domain
PROSITE profilePS5100528.11355217IPR003441NAC domain
PfamPF023652.2E-1256198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MARSWLIDIG GFAKKVKSTT LSSADQIKDC GAYRECPNCS YHIDNSDVST EWPGFPLGVK  60
FDPSDVELLE HLAAKCGIGN TQQHMFINEF IPTLEGDQGI CYTHPENLPG AKKDGSYVHF  120
FHRTTNAYAT GQRKRRKIHH QQGLTEEHVR WHKTGKTKAI IEDGAHKGFK KIMVLYVRSS  180
ENGSRSYKSN WVMHQYHLGT VEEEKEGEYV VSKIFCQQQK QTEKNEGNPM AEDPDNIISR  240
TGPRTPKPNP PNPPRAGKSV DCDDNIDETV LLSSALDTKT IPGESHAPQS DIQDQDFTGN  300
AAWLAGESQA EESTKYDGCD DILLCKEILD SSAILNDPGL DSTNLEDIAG YATQRARNDN  360
ESCGISVLDS LELDTPDFDL SSLYFCSQDS ILDWMDRL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.380780.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G056400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0980152e-91BT098015.1 Soybean clone JCVI-FLGm-26B21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604012.10.0SUPPRESSOR OF GAMMA RESPONSE 1
RefseqXP_028216994.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLK7MWS80.0K7MWS8_SOYBN; Uncharacterized protein
STRINGGLYMA19G08510.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.16e-89NAC domain containing protein 44