PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G056400.5.p
Common NameGLYMA_19G056400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 315aa    MW: 35214.9 Da    PI: 4.733
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G056400.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.71.1e-231411437128
                  NAM  37 vdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge. 117
                           +i++++P++Lp  +k++ + ++fF+++ ++yatg+rk+r+         ++ +W++tgk+k++++ +g+++g kk++v+y  ++++g+ 
  Glyma.19G056400.5.p  14 QGICYTHPENLP-GAKKDGSYVHFFHRTTNAYATGQRKRRKihhqqgltEEHVRWHKTGKTKAIIE-DGAHKGFKKIMVLYVRSSENGSr 101
                          579*********.556778899******************86777777444788************.999***********655555544 PP

                  NAM 118 ..ktdWvmheyrl 128
                            k++Wvmh+y+l
  Glyma.19G056400.5.p 102 syKSNWVMHQYHL 114
                          449********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.2611133IPR003441NAC domain
SuperFamilySSF1019412.22E-2512133IPR003441NAC domain
PfamPF023653.2E-721114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MFINEFIPTL EGDQGICYTH PENLPGAKKD GSYVHFFHRT TNAYATGQRK RRKIHHQQGL  60
TEEHVRWHKT GKTKAIIEDG AHKGFKKIMV LYVRSSENGS RSYKSNWVMH QYHLGTVEEE  120
KEGEYVVSKI FCQQQKQTEK NEGNPMAEDP DNIISRTGPR TPKPNPPNPP RAGKSVDCDD  180
NIDETVLLSS ALDTKTIPGE SHAPQSDIQD QDFTGNAAWL AGESQAEEST KYDGCDDILL  240
CKEILDSSAI LNDPGLDSTN LEDIAGYATQ RARNDNESCG ISVLDSLELD TPDFDLSSLY  300
FCSQDSILDW MDRL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.380780.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G056400.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0980152e-90BT098015.1 Soybean clone JCVI-FLGm-26B21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604012.10.0SUPPRESSOR OF GAMMA RESPONSE 1
RefseqXP_028216994.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLI1N6Z30.0I1N6Z3_SOYBN; Uncharacterized protein
STRINGGLYMA19G08510.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.12e-53NAC family protein