PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G060700.1.p
Common NameGLYMA_19G060700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 289aa    MW: 33374 Da    PI: 6.8745
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G060700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-12158201347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rW++e++ l+  + +++G+++Wk I+r +  +R + q+ s+ qky
  Glyma.19G060700.1.p 158 RWSEEDHRLFMLGLQKYGKEDWKNISRIIK-TRNPTQVASHAQKY 201
                          9****************************9.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.839153206IPR017930Myb domain
SuperFamilySSF466891.64E-14154205IPR009057Homeodomain-like
SMARTSM007173.6E-8155204IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.6E-14157204IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-7157199IPR009057Homeodomain-like
CDDcd001676.19E-9158202No hitNo description
PfamPF002493.5E-10158201IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MVERNEERIR VPLKRKDFVS IELKERMGEN NNNEFHGCGG NTTSQGGDDG FDEPLYWKYP  60
TLQDLEWEGS SPIDVSAIRD HHHSGSSYVV DATYIQPNLQ DQLPSLQNIN SGNNTHDYPH  120
TQFINSAANQ VAPMWPDSQS NHSLSRKASS WKSNECRRWS EEDHRLFMLG LQKYGKEDWK  180
NISRIIKTRN PTQVASHAQK YFLCQASSNK GKRRSIHDMV LPDNGPVPHR IYQENEVSFP  240
NLDGPITHHI DHQNGVPFQN HTMQELYEIH LAVPHYINQQ NWVLRPMR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G060700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0R0EJA60.0A0A0R0EJA6_SOYBN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-22MYB family protein