PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G061600.2.p
Common NameMYB98
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 201aa    MW: 23125 Da    PI: 8.0012
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G061600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27.1e-171663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd++l+ +++ +G g W++ a+  g++Rt+k+c++rw++yl
  Glyma.19G061600.2.p 16 KGPWTMEEDLILITYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 63
                         79********************************************97 PP
2Myb_DNA-binding353.2e-1169108146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+eE++l+ ++++    + W++Ia++++ gRt++++k++w++
  Glyma.19G061600.2.p  69 RGNITPEEQLLIMELHA----K-WSKIAKHLP-GRTDNEIKNYWRT 108
                          78889999999999987....5.99*******.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-23966IPR009057Homeodomain-like
PROSITE profilePS5129423.2011167IPR017930Myb domain
SuperFamilySSF466894.49E-2613106IPR009057Homeodomain-like
SMARTSM007171.1E-121565IPR001005SANT/Myb domain
PfamPF002496.4E-161663IPR001005SANT/Myb domain
CDDcd001673.65E-101863No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2067115IPR009057Homeodomain-like
PROSITE profilePS5129413.74368114IPR017930Myb domain
SMARTSM007171.9E-768112IPR001005SANT/Myb domain
PfamPF002497.9E-1069108IPR001005SANT/Myb domain
CDDcd001676.80E-1073108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDKKLGNTSH DPEVRKGPWT MEEDLILITY IANHGEGVWN SLAKAAGLKR TGKSCRLRWL  60
NYLRPDVRRG NITPEEQLLI MELHAKWSKI AKHLPGRTDN EIKNYWRTRI QKHLKQASSS  120
FQQQSSNSEI IYHPQACTSQ VSTMAQPIET YSPPSYQGML DPFSIQFPTN PHHSSCCTND  180
DDNNNYWSME DIWSMQLANY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-221111422128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.521850.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G061600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904800.0BT090480.1 Soybean clone JCVI-FLGm-4H21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235865.11e-138MYB transcription factor MYB98
RefseqXP_028217677.11e-138myb-related protein 305-like
SwissprotP813917e-84MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A368UH921e-150A0A368UH92_SOYBN; Uncharacterized protein
STRINGGLYMA19G14230.11e-137(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.12e-73myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]