PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G063600.1.p
Common NameGLYMA_19G063600, LOC100306630
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 183aa    MW: 20119.8 Da    PI: 6.2517
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G063600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.23.3e-4426124199
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC +dC+++pyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l
  Glyma.19G063600.1.p  26 PCAACKFLRRKCMPDCIFSPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRL 115
                          7***************************************************************************************** PP

               DUF260  91 kaelallke 99 
                          ++el+++++
  Glyma.19G063600.1.p 116 QKELDATNA 124
                          ****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.64525126IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-4426123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MLLPKKEVAG CVLEKIMASS SYSNSPCAAC KFLRRKCMPD CIFSPYFPPE EPQKFANVHK  60
IFGASNVSKL LNEVQPHQRE DAVNSLAYEA EARIKDPVYG CVGAISVLQR QVIRLQKELD  120
ATNADLIRYT CNEMPTTQDG RRIIGEGDGD GGSSLGQSPG YYYPSPWNND PLGDGYHRGD  180
NI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-66231348119LOB family transfactor Ramosa2.1
5ly0_B1e-66231348119LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.530580.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G063600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0908390.0BT090839.1 Soybean clone JCVI-FLGm-5B3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604044.11e-135LOB domain-containing protein 25 isoform X1
SwissprotQ8L8Q31e-67LBD25_ARATH; LOB domain-containing protein 25
TrEMBLK7MWX01e-134K7MWX0_SOYBN; Uncharacterized protein
STRINGGLYMA19G12650.31e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109134112
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.11e-69LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]