PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.19G063600.3.p

Common Name

GLYMA_19G063600, LOC100306630

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 167aa MW: 18366.5 Da PI: 5.6876

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G063600.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.6	2.6e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC +dC+++pyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l Glyma.19G063600.3.p 10 PCAACKFLRRKCMPDCIFSPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRL 99 7*************************************************************************************** PP DUF260 91 kaelallke 99 ++el+++++ Glyma.19G063600.3.p 100 QKELDATNA 108 **99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.645	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-44	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MASSSYSNSP CAACKFLRRK CMPDCIFSPY FPPEEPQKFA NVHKIFGASN VSKLLNEVQP 60 HQREDAVNSL AYEAEARIKD PVYGCVGAIS VLQRQVIRLQ KELDATNADL IRYTCNEMPT 120 TQDGRRIIGE GDGDGGSSLG QSPGYYYPSP WNNDPLGDGY HRGDNI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-67	7	118	8	119	LOB family transfactor Ramosa2.1
5ly0_B	7e-67	7	118	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.53058	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G063600.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090839	0.0	BT090839.1 Soybean clone JCVI-FLGm-5B3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003553820.1	1e-123	LOB domain-containing protein 25 isoform X2
Refseq	XP_006604044.1	1e-123	LOB domain-containing protein 25 isoform X1
Refseq	XP_006604045.1	1e-123	LOB domain-containing protein 25 isoform X2
Refseq	XP_014626928.1	1e-123	LOB domain-containing protein 25 isoform X2
Refseq	XP_014626929.1	1e-123	LOB domain-containing protein 25 isoform X2
Swissprot	Q8L8Q3	9e-68	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	K7MWX0	1e-121	K7MWX0_SOYBN; Uncharacterized protein
TrEMBL	K7MWX1	1e-121	K7MWX1_SOYBN; Uncharacterized protein
STRING	GLYMA19G12650.3	1e-122	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-69	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Glyma.19G063600.3.p
Entrez Gene	100306630

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]