PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.19G084000.1.p

Common Name

GLYMA_19G084000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 87aa MW: 9993.55 Da PI: 10.4607

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G084000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.3e-09	11	50	9	48
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +lv +++++G+g+W+++ ++ g R+ k+c++r +yl Glyma.19G084000.1.p 11 HIILVSYIQEHGPGNWRAVLAKTGFSRCSKSCRLRSTNYL 50 899*******************99*******98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.184	1	54	IPR017930	Myb domain
Pfam	PF00249	2.2E-8	11	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.16E-15	12	81	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-11	13	54	IPR009057	Homeodomain-like
CDD	cd00167	2.83E-4	13	50	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-7	55	81	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MCIKQRESRQ HIILVSYIQE HGPGNWRAVL AKTGFSRCSK SCRLRSTNYL RPGIKQGNFS 60 EQEEKMIIHL QDLLGNRYKS IFQAPT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.20427	8e-93	leaf\| seed coat\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G084000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093784	2e-90	BT093784.1 Soybean clone JCVI-FLGm-24M4 unknown mRNA.
GenBank	FJ768022	2e-90	FJ768022.1 Glycine max transcription factor MYB392 mRNA, complete cds.
GenBank	KT031204	2e-90	KT031204.1 Glycine max clone HN_CCL_69 MYB/HD-like transcription factor (Glyma18g49360.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028216681.1	9e-51	transcription factor MYB30-like
Swissprot	P81392	5e-35	MYB06_ANTMA; Myb-related protein 306
TrEMBL	K7MXA3	5e-58	K7MXA3_SOYBN; Uncharacterized protein
STRING	GLYMA19G24531.1	8e-59	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	4e-37	myb domain protein 30

Link Out ? help Back to Top
Phytozome	Glyma.19G084000.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]