PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G095600.1.p
Common NameGLYMA_19G095600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 176aa    MW: 20743.1 Da    PI: 10.1582
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G095600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.31.4e-09594290
                 FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.traetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                         fY+ +A+  G   rk k  k+k+ +   + ++ C ++gkre++  ++ek++r  r +tr+gC+ + +v+    +   +v+ +++ H+Hel 
  Glyma.19G095600.1.p  5 FYCWFARGKGSGARKGKILKNKKGK-KFCDKLFCHRKGKREDRGLTNEKHKRyIRRKTRCGCRTECRVHIGInSRLRYVSYIHNGHSHELL 94
                         9******************996655.7888999**********98855554437999*****98888888775777889**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-7594IPR004330FAR1 DNA binding domain
PfamPF105517.3E-7127175IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGYCFYCWFA RGKGSGARKG KILKNKKGKK FCDKLFCHRK GKREDRGLTN EKHKRYIRRK  60
TRCGCRTECR VHIGINSRLR YVSYIHNGHS HELLNDEECR MLPKNRLQHL FWCDWIIQVD  120
YSVFGDVLAF DATYGKNKYD LLVILFGVNH HNHRTVFGVL VVANKIEETY VRLLE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15161KHKRYIRRKTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G095600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350441e-173AC235044.1 Glycine max strain Williams 82 clone GM_WBb0005G15, complete sequence.
GenBankAC2351181e-173AC235118.1 Glycine max strain Williams 82 clone GM_WBa0027P10, complete sequence.
GenBankAC2352181e-173AC235218.1 Glycine max strain Williams 82 clone GM_WBb0021C10, complete sequence.
GenBankAC2358531e-173AC235853.2 Glycine max clone GM_WBb0081I20, complete sequence.
GenBankAC2362961e-173AC236296.1 Glycine max strain Williams 82 clone GM_WBb0094F23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0R0EKZ71e-125A0A0R0EKZ7_SOYBN; Uncharacterized protein
TrEMBLA0A445FEA51e-125A0A445FEA5_GLYSO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.14e-11FAR1 family protein