PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G122500.1.p
Common NameGLYMA_19G122500, LOC100804332
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 240aa    MW: 25772.8 Da    PI: 6.8545
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G122500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.71.1e-39451461101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC  +C++apyf+ +q ++kfa+vhk+FGasnv+kll+++p ++r++a++s+ yeA+ar++dPvyG+v++il+lqqq+ +
  Glyma.19G122500.1.p  45 PCGACKFLRRKCIGGCIFAPYFCTDQgAAKFAAVHKVFGASNVSKLLSNIPANRRHEAATSISYEAQARLSDPVYGCVSTILALQQQVVS 134
                          7*************************89************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l+aela+l+++l
  Glyma.19G122500.1.p 135 LQAELAMLQTQL 146
                          *******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.56544146IPR004883Lateral organ boundaries, LOB
PfamPF031959.3E-3945143IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAEPQGGIGG DSGASGSKRR STVSKRGMVA QTQDEAIVGS SPATPCGACK FLRRKCIGGC  60
IFAPYFCTDQ GAAKFAAVHK VFGASNVSKL LSNIPANRRH EAATSISYEA QARLSDPVYG  120
CVSTILALQQ QVVSLQAELA MLQTQLMNSK FFYTSALQTT QLHQPNMNAA ALHPAYSNNS  180
CGSTNLLNLS NFNNTPSFDL AMDTTPSSHS LEPLQLTRLS QYEEEEEEES KTQQTFDHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-384514811113LOB family transfactor Ramosa2.1
5ly0_B2e-384514811113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G122500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-108AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553372.11e-179LOB domain-containing protein 20
SwissprotQ9SRV33e-67LBD20_ARATH; LOB domain-containing protein 20
TrEMBLK7MY041e-178K7MY04_SOYBN; Uncharacterized protein
STRINGGLYMA19G30200.21e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-52LOB domain-containing protein 20