PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G132600.1.p
Common NameGLYMA_19G132600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 118aa    MW: 13412.4 Da    PI: 8.8932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G132600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-1262114155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++ +hn+ Er RR+++N+  + Lr llP  +   + kK+s  +++ ++ +YI +Lq
  Glyma.19G132600.1.p  62 KKLSHNASERDRRKKVNNLVSSLRLLLPVeD---QTKKMSIPATVSRVLKYIPELQ 114
                          6789*************************66...8888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.02161113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-1062116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-962114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-962116No hitNo description
SuperFamilySSF474591.44E-1162116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MVALFSPTVF STKGWLLEEE PLSYDVSSKN SFPYQFYSLQ TQIEVEIERS TAPSPDDPAM  60
VKKLSHNASE RDRRKKVNNL VSSLRLLLPV EDQTKKMSIP ATVSRVLKYI PELQHQM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.354901e-117root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G132600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311011e-114KT031101.1 Glycine max clone HN_CCL_45 bHLH transcription factor (Glyma03g28630.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604330.22e-80transcription factor ORG2, partial
TrEMBLK7MY651e-79K7MY65_SOYBN; Uncharacterized protein
STRINGGLYMA19G31361.12e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Representative plantOGRP28261129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-21bHLH family protein