PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G137800.1.p
Common NameGLYMA_19G137800, LOC100786140
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 232aa    MW: 26532.1 Da    PI: 9.7827
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G137800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34211122102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y ++ed++++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF +++Fkkg++
  Glyma.19G137800.1.p  21 FLLKTYMLVEDPATDDVISWNAKGTAFVVWQPPEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFFNDKFKKGER 101
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          ell++i+r+k 
  Glyma.19G137800.1.p 102 ELLHEIRRRKA 112
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.36E-3217110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5117110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.7E-3618110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3021110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEGTSNKGLL ECGRKCTPPP FLLKTYMLVE DPATDDVISW NAKGTAFVVW QPPEFARDLL  60
PTLFKHSNFS SFVRQLNTYG FRKVATSRWE FFNDKFKKGE RELLHEIRRR KAWSSKQQPN  120
APNQGTPQDS DEDQRSSSTS SSFGYTTLVD ENKRLKKENG VLNSELTSMK RKCKELLDLV  180
ATYSSHAKEE KKDERPMLFG VRLEVQGGRE MKRNRAEMSE STSIMLSQSC K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-201911018120Heat shock factor protein 1
5d5u_B3e-201911027129Heat shock factor protein 1
5d5v_B3e-201911027129Heat shock factor protein 1
5d5v_D3e-201911027129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.266970.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G137800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0987910.0BT098791.1 Soybean clone JCVI-FLGm-16B16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340398.11e-173heat stress transcription factor 36 isoform 2
RefseqXP_028216976.11e-173heat stress transcription factor B-3-like isoform X2
SwissprotO222301e-69HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A0B2Q4L11e-172A0A0B2Q4L1_GLYSO; Heat stress transcription factor B-3
TrEMBLI1N8Z61e-172I1N8Z6_SOYBN; Uncharacterized protein
STRINGGLYMA19G31940.21e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.14e-64heat shock transcription factor B3