PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G141700.2.p
Common NameGLYMA_19G141700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 629aa    MW: 68999.4 Da    PI: 6.1418
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G141700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07253273526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C++Gd C +aHg
  Glyma.19G141700.2.p 253 PCPEFRK-GACRRGDMCEYAHG 273
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.26E-1616139IPR020683Ankyrin repeat-containing domain
PfamPF127962.0E-920126IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.0E-1756140IPR020683Ankyrin repeat-containing domain
CDDcd002042.80E-1357147No hitNo description
PROSITE profilePS5029717.958133IPR020683Ankyrin repeat-containing domain
SMARTSM002480.145888IPR002110Ankyrin repeat
PROSITE profilePS5008811.86193128IPR002110Ankyrin repeat
SMARTSM002480.001193125IPR002110Ankyrin repeat
SMARTSM003569.5E-6248274IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4253273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981253275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4281311IPR000571Zinc finger, CCCH-type
SMARTSM0035664283306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MNHLSLDTED SLASLLLELA ANNDVSGFKR LIECEPSSID EVGLWYGRHK ESKKMVNEQR  60
TPLMVAATYG SIDVMTLILS LSEADVNRSS GLDKSTALHC AASGGSENAV DAVKLLLEAG  120
ADRNSVDANG RRPGDVIVSP PKLDYVKKSL EELLGSDDWS LLRVMRSTCN GCSAEDLKMK  180
TNEVSEKKEY PVDLSLPDIK NSIYSSDEFR MYSFKVRPCS RAYSHDWTEC PFVHPGENAR  240
RRDPRKFHYS CVPCPEFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRLCK DGTNCARRVC  300
FFAHTNEELR PLYVSTGSAV PSPRSSASSA MDFVAAISPS SMSVMSPSPF TPPMSPSSAS  360
IAWPQPNIPA LHLPGSNFHS SRLRSSLNAR DFSVDDFDLL LPDYDHHHHQ QQQQQQFLNE  420
LSCLSPHAMN CNTMNRSGRM KPLTPSNLDD LFSAESSSPR YADPALASAA SLGMSPRNVE  480
PISPMGSRIS MLAQREKQQF RSLSFQELGS NSAAASADSW SKWGSPNVKL DWPVGAGEVG  540
KLRRSSSFEL GNNGEEPDLS WVQSLVKESP AEVKDKLATT VSYVAAAAAG SSSEGSNIST  600
QMESVVDHAV LGAWLEQMQL DHLVAQQN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.286260.0cotyledon| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G141700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604367.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_006604368.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_014627434.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_014627435.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_028216876.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_028216877.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_028216878.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0R0EXJ60.0A0A0R0EXJ6_SOYBN; Uncharacterized protein
TrEMBLA0A445FGA80.0A0A445FGA8_GLYSO; Zinc finger CCCH domain-containing protein 30 isoform C
STRINGGLYMA19G32340.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]