PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G143900.1.p
Common NameGLYMA_19G143900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 367aa    MW: 40209.2 Da    PI: 6.5893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G143900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09210257455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++sLq
  Glyma.19G143900.1.p 210 SHSLAERARREKINARMKLLQELVPGC----DKISGTAMVLDEIINHVQSLQ 257
                          8*************************9....78899***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-15204275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-9204261No hitNo description
PROSITE profilePS5088814.653206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15207274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-7210257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-9212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDQAPGGLRG SVHHGATLES IQFNEEIQGL MAPAPENASS FTALLELPPT QAVELLHSPE  60
SDSARKPPNC HVSANQKPYL LNSFGSNLTF PSNAALIERA AKFSVFAGEN SPPPPGEARL  120
IPAGTGSTLD RVKNEPQETD SNPCSSSRLG CISDPAVENN IQRTAKRKER EKKAKGSSKK  180
RKSAADETSG DGEKLPYVHV RVRRGQATDS HSLAERARRE KINARMKLLQ ELVPGCDKIS  240
GTAMVLDEII NHVQSLQRQV EILSMKLAAV NPRMDFSLDS LLATDGASLV DSNLPSMVTP  300
LMWPEIPLNG NRQHYQQQWQ LDAFHQPLWE REEVNHNFMT PENSLLSYDS SANSASLHLN  360
QLKMEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165181KRKEREKKAKGSSKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.178720.0cotyledon| flower| hypocotyl| pod| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G143900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6172390.0FJ617239.1 Glycine max bHLH transcription factor PTF1 (PTF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028218487.10.0transcription factor bHLH48-like isoform X2
SwissprotQ8VZ025e-97BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A445FGF80.0A0A445FGF8_GLYSO; Transcription factor bHLH48 isoform A
TrEMBLI1N9440.0I1N944_SOYBN; Uncharacterized protein
STRINGGLYMA19G32570.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-100bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]