PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G146600.2.p
Common NameGLYMA_19G146600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 375aa    MW: 41936.6 Da    PI: 8.2662
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G146600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31251305155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWt++LHe+Fve+v++LGG+e+AtPk+il++m+ +gLt+ hvkSHLQkYR+
  Glyma.19G146600.2.p 251 KTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMNTDGLTIFHVKSHLQKYRI 305
                          68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.77248308IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-28249306IPR009057Homeodomain-like
SuperFamilySSF466891.76E-17249305IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-23251306IPR006447Myb domain, plants
PfamPF002491.2E-9255304IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNENKIDWGG LIQQSHGLSG DFNSEFGNRY CQYFDIRQAW NMGPLSMFGG EATDHELPNI  60
GHVKSSGTIM SRFESPASAF YATENCMGFA EYDCQVGVHS LSSQLCKIND LEFPLYQSFS  120
RENLFLDSAN QSETNFDLSN TLQSIVKSQL NSGNQCRRSP EKSNQISSGN FPSSKFLPIE  180
QQKLFVDGLI RGSSFLKKGN QDHMVGHGSF NLSVPQLRFS SQIEKLYPTL SAGSVSTIGN  240
SASNGAIVSS KTRIRWTKDL HEKFVECVNR LGGAEQATPK AILKMMNTDG LTIFHVKSHL  300
QKYRIAKFIP EPSHGNFYSF LFYQICSVVF FSCHGHFLVL GFTGIHVTMM SRCFFYSACQ  360
KGSGYKLLLF LLWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-23251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-23251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-23251308158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-23251308158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-23251308158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-23251308158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-23251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-23251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-23251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-23251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-23251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-23251308259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.248390.0cotyledon| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G146600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312050.0KT031205.1 Glycine max clone HN_CCL_162 MYB/HD-like transcription factor (Glyma19g32850.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237074.20.0MYB-CC domain-containing transcription factor PHR31
RefseqXP_028216362.10.0uncharacterized protein LOC114398374
TrEMBLA0A445FGJ00.0A0A445FGJ0_GLYSO; Uncharacterized protein
TrEMBLI1N9750.0I1N975_SOYBN; Uncharacterized protein
STRINGGLYMA19G32850.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.21e-35G2-like family protein