PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G147100.2.p
Common NameGLYMA_19G147100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 226aa    MW: 23578.9 Da    PI: 9.1954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G147100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-093156227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         kt++C+ f     Ck+Gd+C+FaHg+
  Glyma.19G147100.2.p 31 KTRICNKFNTAEGCKFGDKCHFAHGE 56
                         8***********************96 PP
2zf-CCCH34.53.6e-11192216126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC +f + G C +GdrC+FaHg
  Glyma.19G147100.2.p 192 FKTKLCENFTK-GSCTFGDRCHFAHG 216
                          69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-142759IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-82860IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-42956IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.612957IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-63156IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.31E-1688170IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.0E-1797166IPR004088K Homology domain, type 1
SMARTSM003221.8E-1297167IPR004087K Homology domain
PROSITE profilePS5008415.15898162IPR004088K Homology domain, type 1
PfamPF000133.5E-12100163IPR004088K Homology domain, type 1
CDDcd001058.07E-16100163No hitNo description
Gene3DG3DSA:4.10.1000.102.9E-16188222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-9190221IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7191217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.427191218IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-9192216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMNLTPAAPP ASRNVAALPP VPNGSAPPAV KTRICNKFNT AEGCKFGDKC HFAHGEWELG  60
KHIAPSFDDH RTMGPTGVGR LAGRMEPPPG PAASFGANAT AKISVEASLA GAIIGKGGVN  120
SKQICRQTGA KLSIREHESD PNLRNIELEG SFEQIKEASN MVKDLLLTLQ MSAPPKTTPG  180
VPGAPASHGS NFKTKLCENF TKGSCTFGDR CHFAHGAAEL RKSGV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.547920.0cotyledon| leaf| root| seed coat| somatic embryo| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G147100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1660910.0AC166091.3 Glycine max cultivar Williams 82 clone gmw1-11j16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242454.21e-164KH and zinc finger (CCCH type) domain-containing protein
RefseqXP_006603730.11e-164KH and zinc finger (CCCH type) domain-containing protein isoform X1
RefseqXP_028218825.11e-164zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ36e-79C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A445FGQ51e-162A0A445FGQ5_GLYSO; Zinc finger CCCH domain-containing protein 14 isoform A (Fragment)
TrEMBLI1N9801e-164I1N980_SOYBN; Uncharacterized protein
STRINGGLYMA19G32910.11e-163(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-67C3H family protein