PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G162500.1.p
Common NameGLYMA_19G162500, LOC102660083
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 212aa    MW: 23472.7 Da    PI: 9.1947
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G162500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000132951123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ C++ F++   L  H+++H
  Glyma.19G162500.1.p 29 YACSFCKREFKSAQALGGHMNVH 51
                         89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.61E-62655No hitNo description
Gene3DG3DSA:3.30.160.608.2E-42754IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00792951IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-62952IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1362956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEGNFLTRNT HNKGDRFGFE EHSWPARNYA CSFCKREFKS AQALGGHMNV HRRDRARLRS  60
CLTPSSWVSS EFPNKPNPSI EPNPTHLSSS SPSSSCISNN LLNCAHTSPL YIPSLTLSSS  120
LTPASPNGDK KPRRVSPHLL PLLIHQRCEE IKMSKNKASG LGVEEVRGCA IGEELKFFKS  180
STSEHNIKLE LGIGLIKQPE KLDLELRLGH C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-112451229superman protein
2l1o_A4e-112451229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G162500.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604486.11e-153transcriptional regulator SUPERMAN
RefseqXP_028216309.11e-153transcriptional regulator SUPERMAN-like
TrEMBLA0A445FH521e-152A0A445FH52_GLYSO; Transcriptional regulator SUPERMAN
TrEMBLK7MYN71e-152K7MYN7_SOYBN; Uncharacterized protein
STRINGGLYMA19G34531.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.14e-19zinc-finger protein 10