PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G163800.1.p
Common NameGLYMA_19G163800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 190aa    MW: 21231.6 Da    PI: 11.6586
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G163800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.35.7e-1165106751
                  AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          r+++ +g++vAe rdp+ ng   r++ g f+tae Aa a+++a+ 
  Glyma.19G163800.1.p  65 RRRP-WGKFVAEKRDPTRNG--VRVWTGAFDTAEAAALAYDQAAF 106
                          5566.*******99997786..*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.41354118IPR001471AP2/ERF domain
PRINTSPR003678.9E-56172IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1665119IPR016177DNA-binding domain
SMARTSM003807.1E-2265124IPR001471AP2/ERF domain
PfamPF008475.9E-765106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-2165118IPR001471AP2/ERF domain
PRINTSPR003678.9E-584100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAIIHTGLTI LREERRAARF TYSSNLGLPL NQLLQFFEIA LFDSRVKSTF ILLNLRAFNE  60
NQRSRRRPWG KFVAEKRDPT RNGVRVWTGA FDTAEAAALA YDQAAFLTRG VLATLNFSVQ  120
VVMESLQNMG FKASKNDLSP LLALKRMHVM RTKSRANRSG SKKVKRACSN GKLDTTTQNV  180
LVLEGLGPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20651211066ATERF1
3gcc_A5e-20651211066ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G163800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958431e-142BT095843.1 Soybean clone JCVI-FLGm-15O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241445.16e-69ethylene-responsive transcription factor 15-like
RefseqXP_028225580.16e-69ethylene-responsive transcription factor 15-like
SwissprotQ8VYM02e-32ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A445FHE81e-136A0A445FHE8_GLYSO; Ethylene-responsive transcription factor 15
TrEMBLK7MYP11e-136K7MYP1_SOYBN; Uncharacterized protein
STRINGGLYMA19G34661.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-21ethylene response factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]