PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G174000.1.p
Common NameGLYMA_19G174000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 172aa    MW: 19290.4 Da    PI: 10.0009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G174000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000914163123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ Fs+   L  H  +H
  Glyma.19G174000.1.p 41 FECKTCNRKFSSFQALGGHRASH 63
                         89**********99999998887 PP
2zf-C2H214.59.9e-0590112123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg+ Fs    L  H+r+H
  Glyma.19G174000.1.p  90 HECSICGQEFSLGQALGGHMRRH 112
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-104165IPR007087Zinc finger, C2H2
SMARTSM003550.194163IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.33E-841112No hitNo description
PROSITE profilePS5015710.4084168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-488112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-990113IPR007087Zinc finger, C2H2
SMARTSM003550.07990112IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.84790112IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKRQRDFKGF ESIDLANCLM MLSHPQQNEK LLQKKIEAVE FECKTCNRKF SSFQALGGHR  60
ASHKRSKLEG DHELKAHAIS LSLANKPKMH ECSICGQEFS LGQALGGHMR RHRTTIHEDF  120
SSIKQVITQM PVLKRSNSTR VVTCLDLNLT PLENDLKLLF GKMAPNAGAF A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.361240.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G174000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353150.0AC235315.1 Glycine max strain Williams 82 clone GM_WBb0074H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235638.21e-125C2H2-type zinc finger protein
RefseqXP_028217848.11e-125zinc finger protein ZAT11-like
SwissprotQ9SLD44e-47ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A445FHU01e-123A0A445FHU0_GLYSO; Zinc finger protein ZAT11
TrEMBLI1NA081e-123I1NA08_SOYBN; Uncharacterized protein
STRINGGLYMA19G35740.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-49C2H2 family protein