PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G174100.1.p
Common NameGLYMA_19G174100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 87aa    MW: 9732.2 Da    PI: 10.6171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G174100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00043456123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ F++   L  H  +H
  Glyma.19G174100.1.p 34 FECKTCNRKFTSFQALGGHRASH 56
                         89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.2E-43152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.41E-53257No hitNo description
PfamPF139129.0E-123358IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5563461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MKRHRESEEV KSIVTSVCLK MLSQAGDSPT REVFECKTCN RKFTSFQALG GHRASHKSLS  60
GSGTGRPHEK THRRVFIFFY KLGSCI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G174100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353151e-144AC235315.1 Glycine max strain Williams 82 clone GM_WBb0074H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520631.13e-21zinc finger protein ZAT11
RefseqXP_028223819.13e-21zinc finger protein ZAT11-like
TrEMBLA0A445FHX13e-56A0A445FHX1_GLYSO; Zinc finger protein ZAT11
TrEMBLK7MYV93e-56K7MYV9_SOYBN; Uncharacterized protein
STRINGGLYMA19G35755.16e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-14C2H2 family protein