PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G177400.2.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 342aa    MW: 38581.4 Da    PI: 7.568
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G177400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.5e-3365121360
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Glyma.19G177400.2.p  65 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGNIAEIVYKGEHNHSK 121
                          9***************************************.***************85 PP
2WRKY103.11.6e-32260317259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k+ver+ +dp+ +++tYeg+Hnhe
  Glyma.19G177400.2.p 260 GDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPRSFVTTYEGKHNHE 317
                          5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-3050122IPR003657WRKY domain
SuperFamilySSF1182909.29E-2662122IPR003657WRKY domain
SMARTSM007748.0E-3763121IPR003657WRKY domain
PfamPF031062.1E-2565119IPR003657WRKY domain
PROSITE profilePS5081123.61765122IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-33245319IPR003657WRKY domain
SuperFamilySSF1182901.31E-28252319IPR003657WRKY domain
PROSITE profilePS5081133.947254319IPR003657WRKY domain
SMARTSM007741.1E-37259318IPR003657WRKY domain
PfamPF031061.6E-25261317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEANFQHSIH EKFRTNTSSN LDQSITPQTE INYQSSEPSK MVQQNIEEDQ KVLTSSVNCD  60
RPSYDGYNWR KYGQKQVKGS EYPRSYYKCT HPNCPVKKKV ERSFDGNIAE IVYKGEHNHS  120
KPQLHKRNSA AGTQGSGVVS DGIVQDMWSN SHSERNEGNE VRIENTGLSM HSDYYVKVPR  180
PNDSALNVGA TNAGGVSTEN SCGLSGECEE GSKGFEAQED EPRYKRRKNE NQSNEAALSE  240
EGLVEPRIVM QSFMDSEILG DGFRWRKYGQ KVVKGNPYPR SYYRCTNIKC NVRKHVERAI  300
DDPRSFVTTY EGKHNHEMPL KNTGTVASER DSQASLSKDK A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3165319877Probable WRKY transcription factor 4
2lex_A2e-3165319877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.332100.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G177400.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312420.0KT031242.1 Glycine max clone HN_CCL_24 WRKY transcription factor (Glyma19g36100.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304597.10.0WRKY transcription factor 44-like
RefseqXP_003554351.10.0WRKY transcription factor 44-like isoform X1
RefseqXP_025982735.10.0WRKY transcription factor 44-like isoform X1
RefseqXP_028215930.10.0WRKY transcription factor 44-like
SwissprotQ9ZUU08e-77WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A445FI030.0A0A445FI03_GLYSO; WRKY transcription factor 44
TrEMBLI1NA430.0I1NA43_SOYBN; WRKY transcription factor
STRINGGLYMA19G36100.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.29e-80WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]