PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G178200.3.p
Common NameGLYMA_19G178200, LOC100797238
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 459aa    MW: 50314.7 Da    PI: 6.7425
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G178200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-16123172155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Glyma.19G178200.3.p 123 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHVAARAYDRAAIKFRG 172
                          78*******************......55************************997 PP
2AP2422.3e-13215265155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Glyma.19G178200.3.p 215 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELEAARAYDKAAIKCNG 265
                          89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-15123182IPR016177DNA-binding domain
PfamPF008471.6E-8123172IPR001471AP2/ERF domain
SMARTSM003802.7E-32124186IPR001471AP2/ERF domain
PROSITE profilePS5103217.477124180IPR001471AP2/ERF domain
CDDcd000181.63E-23124182No hitNo description
Gene3DG3DSA:3.30.730.109.0E-17124181IPR001471AP2/ERF domain
CDDcd000188.81E-25215275No hitNo description
SuperFamilySSF541711.18E-16215274IPR016177DNA-binding domain
PfamPF008475.9E-9215265IPR001471AP2/ERF domain
SMARTSM003801.6E-31216279IPR001471AP2/ERF domain
PROSITE profilePS5103215.606216273IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-15216273IPR001471AP2/ERF domain
PRINTSPR003674.7E-6217228IPR001471AP2/ERF domain
PRINTSPR003674.7E-6255275IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLDLNLNADS ASDLQMESSG SFNSSVVNAA DTDDSCSYGD AVAYNFAILN NAATSDGLPL  60
GAAGEPSVRT IQLFPAADSG ASAAAWLDFS SKVDQHGAPP EQRITPRQQQ VKKSRRGPRS  120
RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHVAA RAYDRAAIKF RGVDADINFN  180
VSDYDEDIKQ MSNFTKEEFV HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY  240
IYLGLFDSEL EAARAYDKAA IKCNGREAVT NFEPSLYEGE VISQSDNEDT KQSLDLNLGI  300
APPSYSDGQI KNTPSNGSGM IAPQSWDDIP LDKRVMFEHS GSRSRTIQPP HHGFSIASGQ  360
HPSVWNGSNF FPIYEETAIE KRMEAAPVPN WAWQVQGPYG RATLAPPFST AASSGFPSTI  420
IPSAADTQIR FPNMTFLHSH FPSSITNSGT ISPFFFGS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.528490.0flower| hypocotyl| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G178200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-98AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627678.10.0floral homeotic protein APETALA 2 isoform X2
RefseqXP_028216401.10.0APETALA2-like protein 3 isoform X2
SwissprotB8AMA91e-104AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A445FI300.0A0A445FI30_GLYSO; Floral homeotic protein APETALA 2 isoform C
TrEMBLK7MYY30.0K7MYY3_SOYBN; Uncharacterized protein
STRINGGLYMA19G36200.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-109related to AP2.7