PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G189700.1.p
Common NameGLYMA_19G189700, LOC100807872
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 215aa    MW: 25143.4 Da    PI: 8.2064
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G189700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1856110256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k+ ++t++q+e Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k
  Glyma.19G189700.1.p  56 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 110
                          57788*************************************************9 PP
2HD-ZIP_I/II1185.3e-3856147192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+k+kqlE+ y++Lk++yd +++e+++L++ev +L++ 
  Glyma.19G189700.1.p  56 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDMLKHQYDVVSNEKQKLQEEVIKLKAM 145
                          69**************************************************************************************98 PP

          HD-ZIP_I/II  91 lk 92 
                          l+
  Glyma.19G189700.1.p 146 LS 147
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.14E-1945114IPR009057Homeodomain-like
PROSITE profilePS5007117.81552112IPR001356Homeobox domain
SMARTSM003891.0E-1654116IPR001356Homeobox domain
CDDcd000869.03E-1655113No hitNo description
PfamPF000465.8E-1656110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-2058120IPR009057Homeodomain-like
PRINTSPR000317.0E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000317.0E-592108IPR000047Helix-turn-helix motif
PfamPF021836.4E-9112146IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDWHHGTKPF VPRPETLSFF YNYDNNNSYP GVEVKQAALM ETGERSVPAM DRGNKEKKKR  60
LTNNQIELLE RSFQEEIKLD PERKMKLSRE LGLQPRQIAV WFQNRRTRWK AKQLEHLYDM  120
LKHQYDVVSN EKQKLQEEVI KLKAMLSKQQ GYWTQKFGGY TEISGEETVE STSEGLRGKS  180
NIEHVADQGY CSFAVEDYNT TVSLPHCHWP VVPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRTRWKAKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G189700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-102AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553578.11e-162homeobox-leucine zipper protein ATHB-22
RefseqXP_028216369.11e-162homeobox-leucine zipper protein ATHB-22-like
SwissprotQ9LZR04e-45ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A445FIN01e-160A0A445FIN0_GLYSO; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLK7MZ571e-160K7MZ57_SOYBN; Uncharacterized protein
STRINGGLYMA19G37380.21e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.17e-43homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]