PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G189700.2.p
Common NameGLYMA_19G189700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 176aa    MW: 20590.3 Da    PI: 8.6403
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G189700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.9e-191771256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          k+ ++t++q+e Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k
  Glyma.19G189700.2.p 17 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 71
                         67788*************************************************9 PP
2HD-ZIP_I/II118.73.2e-3817108192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+k+kqlE+ y++Lk++yd +++e+++L++ev +L++ 
  Glyma.19G189700.2.p  17 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDMLKHQYDVVSNEKQKLQEEVIKLKAM 106
                          69**************************************************************************************98 PP

          HD-ZIP_I/II  91 lk 92 
                          l+
  Glyma.19G189700.2.p 107 LS 108
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-19975IPR009057Homeodomain-like
PROSITE profilePS5007117.8151373IPR001356Homeobox domain
SMARTSM003891.0E-161577IPR001356Homeobox domain
CDDcd000863.38E-151674No hitNo description
PfamPF000462.3E-161771IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-201981IPR009057Homeodomain-like
PRINTSPR000315.2E-54453IPR000047Helix-turn-helix motif
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PRINTSPR000315.2E-55369IPR000047Helix-turn-helix motif
PfamPF021834.6E-973107IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
METGERSVPA MDRGNKEKKK RLTNNQIELL ERSFQEEIKL DPERKMKLSR ELGLQPRQIA  60
VWFQNRRTRW KAKQLEHLYD MLKHQYDVVS NEKQKLQEEV IKLKAMLSKQ QGYWTQKFGG  120
YTEISGEETV ESTSEGLRGK SNIEHVADQG YCSFAVEDYN TTVSLPHCHW PVVPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16573RRTRWKAKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G189700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150373e-94AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553578.11e-128homeobox-leucine zipper protein ATHB-22
RefseqXP_028216369.11e-128homeobox-leucine zipper protein ATHB-22-like
SwissprotQ9LZR06e-45ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A0R0EPQ31e-128A0A0R0EPQ3_SOYBN; Uncharacterized protein
STRINGGLYMA19G37380.21e-128(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-43homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]