PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G192300.2.p
Common NameGLYMA_19G192300, LOC100813245
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 423aa    MW: 48620.5 Da    PI: 7.2767
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G192300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.24.9e-143493987
             trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                         +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Glyma.19G192300.2.p  3 EEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 49
                         69*****************************98..55667*******85 PP
2trihelix57.34.2e-18266348284
             trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                          Wt++e+  L ++r eme+r+ + g++++  Wee++ km+  g+ers++  kekwe+++++ + +k+g+kkr +e+s++c yfd+
  Glyma.19G192300.2.p 266 WTESEIARLQQLRAEMETRYMQsGCSEEVMWEEIATKMACFGYERSAVVFKEKWESISNYARSVKDGSKKR-KEDSRSCFYFDN 348
                          *******************98648**********************************************8.88899*****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.7E-9350No hitNo description
PfamPF138372.1E-11264350No hitNo description
PROSITE profilePS500906.028265323IPR017877Myb-like domain
CDDcd122036.27E-16266330No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSEEHGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGENSNQASV  60
PETNFGSGSL RFHTSSHNNP SQTNQEMFQS QKHCDSLSLT NSTDLDTSSS DDNDQNSTGG  120
GLKDNDSMEK RRKRVSGRSW KVKIKDFIDS QMRKLVEKQE EWLDKLTKTL EQKEKERVLR  180
EEEWRRQEAA RLEREHKFWA KERAWIEARD AALMEALHKL TGNGIIKSTH SPDGLMVTGI  240
QNHSENQNED GSEILNSTTA RGAESWTESE IARLQQLRAE METRYMQSGC SEEVMWEEIA  300
TKMACFGYER SAVVFKEKWE SISNYARSVK DGSKKRKEDS RSCFYFDNSD QSSLYNQGGA  360
YCDINDQRHK TGRLQTNDGS SPSNSNVGNT VAVDNCFPFL MTESGNLWEN YSLKVNKASQ  420
NQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.193180.0hypocotyl| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}.
UniprotTISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G192300.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553586.10.0trihelix transcription factor PTL
RefseqXP_028215871.10.0trihelix transcription factor PTL-like
SwissprotQ9LZS01e-112PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A445FIK50.0A0A445FIK5_GLYSO; Trihelix transcription factor PTL
TrEMBLI1NAJ90.0I1NAJ9_SOYBN; Uncharacterized protein
STRINGGLYMA19G37660.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-93Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]