PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G195800.1.p
Common NameGLYMA_19G195800, LOC100777948
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 255aa    MW: 29272.3 Da    PI: 5.0942
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G195800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.62.6e-4541341127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                          +ppG+rF Pt+eel+++yL++k+eg++ ++++vi+ vdiy+++P++Lp+    +   ++++w+fF++r++++a+g r++r t++gyWkat
  Glyma.19G195800.1.p   4 MPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSELPQisgeASMRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKAT 93 
                          79****************************99****************6556422235569***************************** PP

                  NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          g+ ++v+s++++ +g+k+t+vfy+grap+g+ktdW m+ey+
  Glyma.19G195800.1.p  94 GSPNHVYSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYT 134
                          ****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-492157IPR003441NAC domain
PROSITE profilePS5100549.074157IPR003441NAC domain
PfamPF023651.4E-225134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MENMPPGYRF YPTEEELISF YLHNKLEGER EDMNRVIPVV DIYDYNPSEL PQISGEASMR  60
DTEQWFFFIP RQESEARGGR PKRLTTTGYW KATGSPNHVY SSDNRIIGIK RTMVFYSGRA  120
PNGTKTDWKM NEYTAIKTSS SSPTLRKEFN LCRVYKKSKC LTAFDRRPPP RRDTESYSGA  180
QNVEEQQKGS TSYDDYHHKM VERSATCSPA ESSSSGDHDQ PPLHGEEATQ MDVDNNDDPF  240
LDWEKVDMFL GSEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-35315716165NO APICAL MERISTEM PROTEIN
1ut4_B2e-35315716165NO APICAL MERISTEM PROTEIN
1ut7_A2e-35315716165NO APICAL MERISTEM PROTEIN
1ut7_B2e-35315716165NO APICAL MERISTEM PROTEIN
3swm_A2e-35315719168NAC domain-containing protein 19
3swm_B2e-35315719168NAC domain-containing protein 19
3swm_C2e-35315719168NAC domain-containing protein 19
3swm_D2e-35315719168NAC domain-containing protein 19
3swp_A2e-35315719168NAC domain-containing protein 19
3swp_B2e-35315719168NAC domain-containing protein 19
3swp_C2e-35315719168NAC domain-containing protein 19
3swp_D2e-35315719168NAC domain-containing protein 19
4dul_A2e-35315716165NAC domain-containing protein 19
4dul_B2e-35315716165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G195800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553602.10.0NAC domain-containing protein 90
RefseqXP_028217568.10.0NAC domain-containing protein 90-like
TrEMBLA0A445FIZ20.0A0A445FIZ2_GLYSO; NAC domain-containing protein 90 isoform A
TrEMBLK7MZ950.0K7MZ95_SOYBN; Uncharacterized protein
STRINGGLYMA19G38211.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-73NAC domain containing protein 90