PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G195800.2.p
Common NameGLYMA_19G195800, LOC100777948
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 197aa    MW: 22465.8 Da    PI: 7.0442
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G195800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.41.1e-2647655127
                  NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          +++w+fF++r++++a+g r++r t++gyWkatg+ ++v+s++++ +g+k+t+vfy+grap+g+ktdW m+ey+
  Glyma.19G195800.2.p   4 TEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYT 76 
                          579*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.028199IPR003441NAC domain
SuperFamilySSF1019415.1E-29399IPR003441NAC domain
PfamPF023653.0E-11776IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MRDTEQWFFF IPRQESEARG GRPKRLTTTG YWKATGSPNH VYSSDNRIIG IKRTMVFYSG  60
RAPNGTKTDW KMNEYTAIKT SSSSPTLRKE FNLCRVYKKS KCLTAFDRRP PPRRDTESYS  120
GAQNVEEQQK GSTSYDDYHH KMVERSATCS PAESSSSGDH DQPPLHGEEA TQMDVDNNDD  180
PFLDWEKVDM FLGSEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-2259971165NO APICAL MERISTEM PROTEIN
1ut4_B2e-2259971165NO APICAL MERISTEM PROTEIN
1ut7_A2e-2259971165NO APICAL MERISTEM PROTEIN
1ut7_B2e-2259971165NO APICAL MERISTEM PROTEIN
4dul_A2e-2259971165NAC domain-containing protein 19
4dul_B2e-2259971165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G195800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553602.11e-147NAC domain-containing protein 90
RefseqXP_028217568.11e-147NAC domain-containing protein 90-like
TrEMBLA0A445FIW41e-146A0A445FIW4_GLYSO; NAC domain-containing protein 90 isoform B
TrEMBLA0A445FIZ21e-145A0A445FIZ2_GLYSO; NAC domain-containing protein 90 isoform A
TrEMBLK7MZ951e-145K7MZ95_SOYBN; Uncharacterized protein
TrEMBLK7MZ961e-146K7MZ96_SOYBN; Uncharacterized protein
STRINGGLYMA19G38211.11e-146(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.29e-53NAC domain containing protein 61