PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G196600.1.p
Common NameGLYMA_19G196600, LOC100781153
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 300aa    MW: 34108.2 Da    PI: 6.9888
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G196600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.86.7e-3177181197
                          EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          f+k ltpsdv+k++rlv+pk++ae++        ++  +++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L +gD+v+F
  Glyma.19G196600.1.p  77 FEKPLTPSDVGKLNRLVIPKQHAEKYfpldssggDSAAAKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVLF 166
                          99******************************8866667999************************************************ PP

                          EE-SSSEE..EEEEE CS
                   B3  83 kldgrsefelvvkvf 97 
                          ++++ + ++++++  
  Glyma.19G196600.1.p 167 HRHRAHPQRFFISCT 181
                          *87666666676665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-4069187IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-3173184IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-2876171No hitNo description
PfamPF023621.6E-2777180IPR003340B3 DNA binding domain
SMARTSM010193.4E-2177184IPR003340B3 DNA binding domain
PROSITE profilePS5086313.6277184IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSSIHHYSPE TTLYWTSDHQ QQQQQQQQQQ QQAATWLSNS HTPRFNLNED DDEEDDVVVS  60
DKATNNLAQE QEKEAMFEKP LTPSDVGKLN RLVIPKQHAE KYFPLDSSGG DSAAAKGLLL  120
SFEDESGKCW RFRYSYWNSS QSYVLTKGWS RYVKDKRLHA GDVVLFHRHR AHPQRFFISC  180
TRHQPNPNPP AHVSIRSSSY SALPAYPTHH HHHLPFPYQP HSLHAPGGGS QGQNETTPGG  240
NSSSGRVLRL FGVNMECQPD NDNDSQNSTH ECSYTHLYHH QTSSYPSSNP HHHMLPQQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-46721833113B3 domain-containing transcription factor NGA1
5os9_B2e-46721833113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.87160.0somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G196600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-88AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553608.10.0B3 domain-containing protein At2g36080
RefseqXP_028218899.10.0B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ28e-60Y2608_ARATH; B3 domain-containing protein At2g36080
SwissprotQ9FNI31e-59Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A445FIT90.0A0A445FIT9_GLYSO; B3 domain-containing protein
TrEMBLK7MZA20.0K7MZA2_SOYBN; Uncharacterized protein
STRINGGLYMA19G38340.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.14e-62B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]