PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G206100.1.p
Common NameGLYMA_19G206100, LOC100802387
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 678aa    MW: 75645.8 Da    PI: 7.4979
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G206100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3841.4e-26135236199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+ltpsd++++g +++pkk+a+e+       +  ++  ++++ +d++g +W +++iyr+k++r++lt+GW+ Fv+a++L +gD+++F 
  Glyma.19G206100.1.p 135 FSKILTPSDTSTHGGFSVPKKHADECfppldmtQ--QTPAQEIVAKDLNGFEWHFRHIYRGKPKRHLLTSGWSTFVNAKKLVAGDSCIFV 222
                          88****************************9643..444569************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++e +v+++r+
  Glyma.19G206100.1.p 223 --RAESGEIRVGIRRA 236
                          ..459999******97 PP
2Auxin_resp82.41e-27263344183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha+s++++F v+Y+P++ + eF+v+++ ++k++   + +GmR++m+ e e+s +r+ +Gt++g +d+d +rWp+S+Wr+Lk
  Glyma.19G206100.1.p 263 ASHAVSSGTMFIVYYHPWTNPFEFIVPLRTYLKSTVPDYPIGMRVQMQHEVEESLRRH-AGTIIGHEDIDKIRWPGSEWRCLK 344
                          789**************************************************99888.9*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-36126265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-40128246IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-25135237IPR003340B3 DNA binding domain
CDDcd100179.06E-24135235No hitNo description
PROSITE profilePS5086313.846135237IPR003340B3 DNA binding domain
PfamPF023622.4E-24135236IPR003340B3 DNA binding domain
PfamPF065072.5E-27263344IPR010525Auxin response factor
PROSITE profilePS5174514.778578660IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MRKRRDMDSP NTQQGLLPSK KGVKDSLYTE LWRACAGSFV YVPREEETVL YFPQGHLEQV  60
AAYTQHQQDG HMEIPVYDLP SKILCKIMHI ELKAEAFSDE VYAQVTLVPA LKQDNLRLEV  120
EENDQIPSIT TTYTFSKILT PSDTSTHGGF SVPKKHADEC FPPLDMTQQT PAQEIVAKDL  180
NGFEWHFRHI YRGKPKRHLL TSGWSTFVNA KKLVAGDSCI FVRAESGEIR VGIRRATEHL  240
SNVSQSSSLI SGHSMQLGIL ASASHAVSSG TMFIVYYHPW TNPFEFIVPL RTYLKSTVPD  300
YPIGMRVQMQ HEVEESLRRH AGTIIGHEDI DKIRWPGSEW RCLKVQWDAV LDDKMNPERV  360
CPWWIEPLES AKEKKQVPAL PTTKKALALN QRSLPGISSF GMHDGQNSAG PSSQTRREDR  420
DLQGQDYSGI HSAQPLQRAP PTDVIHPSKV PIRGSRFGKE NPNQLPFPMQ GPLHKSLSRS  480
MSLTHEDLSI TSSNLSSIGS ESLGWPSTES RNENDVPFGQ PGSCSTFKLF GVSLIDRSSE  540
LPSLQSAAFN KTSSLLSNPP MRVAPGKTCK KCHRVNNRSC TKVLKLGTAL GRAVDLARFH  600
GYTELIAELD SMFEFRGSLI NESSGWHVTC MDDDGDMMQL GDYPWQDFQG VVQKMIICPK  660
EGTNNIKPSS SANPSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1182337015357Auxin response factor 1
4ldw_A1e-1182337015357Auxin response factor 1
4ldw_B1e-1182337015357Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G206100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-39AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604697.10.0auxin response factor 2
TrEMBLK7MZF70.0K7MZF7_SOYBN; Auxin response factor
STRINGGLYMA19G39340.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Representative plantOGRP1325645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-127auxin response factor 2