PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G221700.1.p
Common NameGLYMA_19G221700, LOC100783661
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 517aa    MW: 55591.8 Da    PI: 6.5985
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G221700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30274332259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d+ v+++tYeg+Hnh+
  Glyma.19G221700.1.p 274 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDKAVLITTYEGNHNHP 332
                          7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-33258334IPR003657WRKY domain
SuperFamilySSF1182908.24E-28266334IPR003657WRKY domain
PROSITE profilePS5081129.712268334IPR003657WRKY domain
SMARTSM007743.4E-37273333IPR003657WRKY domain
PfamPF031069.6E-27275332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MDNPHHRQLT FFLSHSIDHT DPPSVKEMDF FSTSSAPDHK NNTSTSDTND DYQKRDDQHD  60
THDRHGSITA DGSPTRATDH HVNTGLNLTC ASAGMTKSDN SENPETELSS LENQLGKLQE  120
ENSKLRSVLD QITKNYAQLQ AQLFNALQKQ KLPKNVETKI VDPGASTKLD VVNNASVSDE  180
KTDQDVSVYR SNNAEVMSKT HDRDDDPQLT KLNLGKQACP DAAEDVLDRS SSQSWGSSKL  240
EEQPKTAEQL PAEQIPLRKA RVSVRARSEA PMISDGCQWR KYGQKMAKGN PCPRAYYRCT  300
MAVGCPVRKQ VQRCADDKAV LITTYEGNHN HPLPPAATAM ANTTSAAAAM LLSGSAAPSK  360
EALTNSAGYY SSSSIPYASM ATLSASAPFP TITLDLTQNP NNAMQLHRVP AGHGATFPLP  420
LHAAAAGPHL LGHPLFFQQK LPPAALMPLL QRQPSSSMVE TVSAAIASDP NFTAALMAAI  480
SSIIGVPRSS DDNNNGNGAI PGSPQLPQSC TTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21260336176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.501230.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G221700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604764.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLI1NBI80.0I1NBI8_SOYBN; Uncharacterized protein
STRINGGLYMA19G40950.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.16e-74WRKY family protein