PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G222000.1.p
Common NameGLYMA_19G222000, Glyma19g40980.1, LOC100784724
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 519aa    MW: 57383.2 Da    PI: 8.8964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G222000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.7e-14340385454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           hn  E++RR++iN+++ +L++l+P++      K++Ka++L  A++Y+k L
  Glyma.19G222000.1.p 340 VHNLSEKKRREKINKKMRTLKDLIPNC-----NKVDKASMLDDAIDYLKTL 385
                          5*************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-18334395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-15334390No hitNo description
Gene3DG3DSA:4.10.280.102.8E-17334392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.682336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-12340385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-16342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MMIQKMFDST RSGMTRSSSH VASINDNDFL ELVWENGEIV VRGGSSSNRS RKTNEERIHE  60
DASINKRTRL NPLYSLEDHF LPQRDSDMSS SHQSNNGQDS CQSSQSKNSC KLHEEFANLL  120
KPVTTGNSHL QQCLPSSPLK KQRTDSTQTP RPAKVNFSNF SIPAVFLKST TTTTTNNYQG  180
NSATQQTKNH SSPARVEEIE ALKVDKSAKE TQCFQKQTSL TVERSTKLPT PAVDEHSEAA  240
GHNCGVLGIH RSQGQTSTSE ALRAKAKAYN NNNINMCHEP LLASSSVCSL GASNDPNLGF  300
RKHEDTDDST YLSDNDGEPE DMVKQDREGN RVKRSRNPEV HNLSEKKRRE KINKKMRTLK  360
DLIPNCNKVD KASMLDDAID YLKTLKLQLQ ANFQIMSMGS GLWPLMMGFR PPQLPIPPLS  420
AITDNRLIQM FGSPNQIPPM PMPHAPFFPI IGNSATQSHL ANNTTTTAAA TTNLAEHLAN  480
SLHGNATKLA PPSQISFQHH HTSTSTPTLA TPFIFPQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345350KKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.17730.0cotyledon| leaf| meristem| seed coat
Function -- GeneRIF ? help Back to Top
  1. PIF3-like gene in soybena is consistently upregulated in response to weed presence. [PIF3]
    [PMID: 25711503]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G222000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311290.0KT031129.1 Glycine max clone HN_CCL_180 bHLH transcription factor (Glyma19g40980.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340167.10.0bHLH transcription factor PIF3
TrEMBLI1NBJ20.0I1NBJ2_SOYBN; BHLH transcription factor
STRINGGLYMA19G40980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-27phytochrome interacting factor 3
Publications ? help Back to Top
  1. Horvath DP, et al.
    RNAseq reveals weed-induced PIF3-like as a candidate target to manipulate weed stress response in soybean.
    New Phytol., 2015. 207(1): p. 196-210
    [PMID:25711503]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]