PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G236900.1.p
Common NameGLYMA_19G236900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 333aa    MW: 37263 Da    PI: 6.1842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G236900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13138189155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Glyma.19G236900.1.p 138 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 189
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.76E-13136193No hitNo description
Gene3DG3DSA:4.10.280.106.2E-14136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16137201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-10143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MTGSHIKVLC MCLPEGERGM ALEAVVYPQP QDPFGYGIKD PSYNYNNLLE GGGGNWGFEK  60
EEQGFVTFLE NQTENYPYGE WNCSPSPPSM LPHLNASNPQ SSETSNIHNN LDSSISTPAR  120
PKRRRTKSRK NKEEIENQRM THIAVERNRR KQMNEYLSVL RSLMPESYVQ RGDQASIIGG  180
AINFVKELEQ RLQFLGGQKE KEEKSDVPFS EFFSFPQYST SAGGGCDNST AMSEQKCEAQ  240
SGIADIEVTM VESHANLKIR SKKRPKQLLK IVSSLHGMRL TILHLNVTTT GEIVLYSLSV  300
KVEEDCKLGS VDEIAAAVYQ MLDRIQQESI LN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138149RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.366510.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G236900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-143AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554664.10.0transcription factor bHLH94
RefseqXP_028217279.10.0transcription factor bHLH94-like
SwissprotQ9C7T42e-82BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0R0F2U20.0A0A0R0F2U2_SOYBN; Uncharacterized protein
STRINGGLYMA19G42520.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]