PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.19G248900.2.p

Common Name

GLYMA_19G248900, LOC100787732

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 198aa MW: 22052.7 Da PI: 6.3957

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G248900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.1	5.2e-19	67	116	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f+tae Aa a+++a++ ++g Glyma.19G248900.2.p 67 YRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDTAEAAALAYDQAALVMRG 116 9*****.******44465..*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	7.6E-31	66	125	IPR001471	AP2/ERF domain
Pfam	PF00847	9.0E-14	66	116	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.288	66	124	IPR001471	AP2/ERF domain
SMART	SM00380	2.0E-36	66	130	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.1E-11	67	78	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.43E-23	67	126	IPR016177	DNA-binding domain
CDD	cd00018	6.74E-21	67	125	No hit	No description
PRINTS	PR00367	7.1E-11	90	106	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MSSSNFESPY EYSCSSSSSR HNQYSLPFNH NDSQEMLLYQ VLTQAGATSS VSHGSGSVVE 60 AEVSVSYRGV RRRPWGKFAA EIRDSTRNGV RVWLGTFDTA EAAALAYDQA ALVMRGSMAV 120 LNFPAEIVRQ SLRNMEQYGS FQEGSSPVLE LKKRHSMKRK SETKKHQLHD VMVLEDLGAE 180 YLEHLLTLSQ DMDMDAC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-28	67	127	6	66	ATERF1
3gcc_A	4e-28	67	127	6	66	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G248900.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003553765.1	1e-146	ethylene-responsive transcription factor 1B
Refseq	XP_028218098.1	1e-146	ethylene-responsive transcription factor 1B-like
Swissprot	A0A3Q7I5Y9	3e-65	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	K7N071	1e-145	K7N071_SOYBN; Uncharacterized protein
STRING	GLYMA19G43815.1	1e-146	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	3e-47	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Glyma.19G248900.2.p
Entrez Gene	100787732

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]