PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G249500.1.p
Common NameGLYMA_19G249500, LOC100817863
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Whirly
Protein Properties Length: 236aa    MW: 26123.8 Da    PI: 9.5601
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G249500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly188.41.1e-58621952137
               Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 
                          vyk+kaa+++ + +ptf++l+sg+++++r+G+++++++ +++erkydWek+q+falsatev++l+ +++++sc+ffhdp++ +sn+G+vr
  Glyma.19G249500.1.p  62 VYKGKAAFSLIPCLPTFTKLNSGTVVVDRRGSIMMTFMHSIGERKYDWEKRQRFALSATEVGSLITMGAQDSCDFFHDPSMLSSNAGQVR 151
                          9***************************************************************************************** PP

               Whirly  92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                          k+l+++P+++  G+fv+l+v n+l+++n++fsvPv+ aefav++++
  Glyma.19G249500.1.p 152 KSLSIKPHAN--GYFVSLTVVNNLLNTNDYFSVPVTTAEFAVMKTA 195
                          ********97..69******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.0E-7149214IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.04E-6053214IPR009044ssDNA-binding transcriptional regulator
PfamPF085366.1E-5662194IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MFKLSRMLPL TSTSRHRLLE VLSSRKVEVG DRLSHSAGIS TATNNYAAKG YASDRIFAPY  60
TVYKGKAAFS LIPCLPTFTK LNSGTVVVDR RGSIMMTFMH SIGERKYDWE KRQRFALSAT  120
EVGSLITMGA QDSCDFFHDP SMLSSNAGQV RKSLSIKPHA NGYFVSLTVV NNLLNTNDYF  180
SVPVTTAEFA VMKTACSFAL PHIMGWDQIT NQQSRGIDDL QVKGDSKVSD LEWEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A7e-86532128169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B7e-86532128169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C7e-86532128169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D7e-86532128169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.136760.0cotyledon| hypocotyl| leaf| root| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G249500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0948850.0BT094885.1 Soybean clone JCVI-FLGm-6I20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554728.11e-178single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0346e-90WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0R0F3K41e-176A0A0R0F3K4_SOYBN; Uncharacterized protein
STRINGGLYMA19G43880.21e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Representative plantOGRP23161635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-82WHIRLY 2